Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01367 ATGGCCTCTTTGTGTTGTTATCTCTTCATTTTTCTTGTTGGGTTTCTTTCAAATTCCCTGTTTCTGGGAGCTGAGCTTGATGATCAAATCATCATGTCCTCTATTAGAGAGGACCTTCAAGTTCCTGGATGGAGCTCAAACATCTCAGATTACTGTTCTTGGAAAGGTGTTCGTTGTGGTTTGAATCATTCCATGGTTGAAGCTCTTGATCTTTCTGGTCACTCTCTTAGAGGTAATCTAACTGTGATTTCTCAGCTCAAGGCTCTGAAATGGCTGGATCTTTCCTTCAATGACTTCCATGGAAAGATTCCGTCGAGTTTTGCTAACTTATTCGAGCTCGAATTCCTCGATTTGTCTTTGAACAAGTTCGATGGCTCGATCCCGCCCGAGCTTGGTGGTTTGAAGAACCTCAAGTCATTGAATCTCTCCAATAATCTACTGGTGGGAGAGATTCCAGATGAGCTTCAAGGCTTACAGAATTTGAGGGATTTTCAAGTTTCTAGCAACAGATTTAATGGTTCAATCCCAATGTGGGTTGGGAATTTCACTCATCTTAGAGTTTTTACAGCTTATGAGAATGCATTTGATGGTGTAATCCCTGATAATCTAGGCTTGGTTTCTGAACTACAAGTGTTGAATCTGCATACCAATAAGCTCGAAGGCCCGATTCCTCGAAGCGTTTTCGCTTCAGGGAAGCTCGAGATTTTGGTTCTAACACAAAACAGATTGAATGGGAATCTTCCTGAAGAGATTGGGAACTGTAAAAGCCTTACTAGCGTTCGAATTGGGAACAACGACCTTGTTGGTGTCGTTCCTCCTGCCATTGGAAATGTTAGTAGCCTTGCTTACTTTGAAGTGAATAACAATCACCTTTCGGGCAATATAACGTCTCGGATAGCGCTGTGCTCTAATCTTACTTTGTTGAATCTAGCCTCGAATGGATTCACCGGGACGATTCCTTCCGAGCTTGGAGAACTGATGAATCTGCAGGAACTTATTCTTTCTGGTAACAATCTGTATGGTGATATTCCAAGATCAATGCTCAAGTGTAAGAATCTCAACAAGCTTGATTTGAGCAACAATAGATTTAATGGTACTATTCCTTCAGATATCTGCAATGTATCAAGATTGCAGTACTTGCTTTTGGAACAGAATTCAATCAAAGGAGAGATACCTAACGAGATCGGAAAATGTACAAAGCTTCTCGACCTCCGACTCGGAAGTAACTACTTAACTGGAAGCATCCCTTCGGAGATCGGTCGGATTAAGAATTTACAGATAGCTTTGAACTTGAGTTTCAACCATCTAAATGGACCGGTGCCTCCTGAGTTGGGGAAGCTTGATAAACTGGTCTCGTTAGATTTGTCGAACAATCATCTCTCGGGCGATATCCCTTCCGAACTCAAGGGCATGTTAAGCTTGATAGAGGTGAATTTTTCGAATAATCTGCTTACTGGTTCGATTCCTTTTTTTGTTCCATTCCAGAAAAGTGCAAATTCTAGTTTTCTAGGGAACGATGGGCTTTGCGGGGCGCCATTAAGCATTTCGTGTAAAAACTCGATCGGGTCATACAATCAAGATTACCATCACAAGGTCTCTTACAAGATCATACTAGCTGTCATCGGTTCAGGGCTGGCTGTCTTCGTATCAGTAACTATAGTTGTTTTACTTTTCGTAATGAAAGAAAAGCAGGAAAAGACAGCAAAATCTTCAGGGATTGCAGATGATGCAACGGTCGACGATCAACCGATTATAATATCAGGAAACGTCTTCGATGATAATCTCCGACAGGAAATAGATCTCGACGCAGTCGTTAAAGCCACGTTGAAGGATTCAAACAAGCTTATCTTTGGCACTTTCAGCACGGTTTACAAGGCGGTTATGCCTTCGGGTATGATCATATCAGTTAAGAGACTAAAATCCATGGATAAGACAATCGTTCATCATCAAAGCAAGATGATCAGAGAGCTTGAAAGGCTTGGTAAACTGAGTCATGCTAATCTTTTGCAGCTCATTGGATATGTAATATATGAAGATGTGGCTCTGTTGCTTCATCATTATCTACCCAATGGGACATTGGCTCAGCTGCTTCATTTGTCCACAAAACAACCTGAGTATCAACCCGATTGGCCTACGAGATTTTCGATAGCCATTGGAGCAGCAGAAGGGCTTGCTTTTCTTCATCATGTGGCTATAATTCATCTTGATATTTCATCATCTAATGTTCTTTTAGATGCAAACTTCAAACCTTTGGTTGGAGAGGTTGAGATCTCAAAGCTTCTTGATCCATCAAGAGGAACTGCTAGTATTAGTGCAGTGGCTGGTTCATTTGGCTACATTCCACCAGAATATGCGTACACGATGCAAGTTACGGCACCTGGAAACGTTTATAGCTACGGTGTTATCTTGCTTGAGATCCTCACTACCAGACTTCCAGTTGATGAGGAGTTTGGTGAAGGAGTAGACTTGGTGAAGTGGGTGCACGGTGCTTCGTCGAGAGGCGAAACGCCTGAACAGATACTTGATTCCCAGCTGAGCACGGTGTCGTTTGGATGGAGGAAGGAGATGCTTGCAGCTCTCAAGATTGCATTGCTATGCACTGATAGCATTCCGGCCAAAAGGCCAAAAATGAAGGTGGTGGTGGAAATGCTTATGGAGATCAAGCAAAATTGA 2673 42.31 MASLCCYLFIFLVGFLSNSLFLGAELDDQIIMSSIREDLQVPGWSSNISDYCSWKGVRCGLNHSMVEALDLSGHSLRGNLTVISQLKALKWLDLSFNDFHGKIPSSFANLFELEFLDLSLNKFDGSIPPELGGLKNLKSLNLSNNLLVGEIPDELQGLQNLRDFQVSSNRFNGSIPMWVGNFTHLRVFTAYENAFDGVIPDNLGLVSELQVLNLHTNKLEGPIPRSVFASGKLEILVLTQNRLNGNLPEEIGNCKSLTSVRIGNNDLVGVVPPAIGNVSSLAYFEVNNNHLSGNITSRIALCSNLTLLNLASNGFTGTIPSELGELMNLQELILSGNNLYGDIPRSMLKCKNLNKLDLSNNRFNGTIPSDICNVSRLQYLLLEQNSIKGEIPNEIGKCTKLLDLRLGSNYLTGSIPSEIGRIKNLQIALNLSFNHLNGPVPPELGKLDKLVSLDLSNNHLSGDIPSELKGMLSLIEVNFSNNLLTGSIPFFVPFQKSANSSFLGNDGLCGAPLSISCKNSIGSYNQDYHHKVSYKIILAVIGSGLAVFVSVTIVVLLFVMKEKQEKTAKSSGIADDATVDDQPIIISGNVFDDNLRQEIDLDAVVKATLKDSNKLIFGTFSTVYKAVMPSGMIISVKRLKSMDKTIVHHQSKMIRELERLGKLSHANLLQLIGYVIYEDVALLLHHYLPNGTLAQLLHLSTKQPEYQPDWPTRFSIAIGAAEGLAFLHHVAIIHLDISSSNVLLDANFKPLVGEVEISKLLDPSRGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVILLEILTTRLPVDEEFGEGVDLVKWVHGASSRGETPEQILDSQLSTVSFGWRKEMLAALKIALLCTDSIPAKRPKMKVVVEMLMEIKQN 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7748464 7752255 - CmoCh07G013670.1 Cmo07g01367 386675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01367 890 Gene3D Ribonuclease Inhibitor 29 175 IPR032675 -
Cmo07g01367 890 Gene3D Ribonuclease Inhibitor 176 229 IPR032675 -
Cmo07g01367 890 ProSiteProfiles Leucine-rich repeat profile. 136 159 IPR001611 GO:0005515
Cmo07g01367 890 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515
Cmo07g01367 890 Pfam Leucine Rich Repeat 136 158 IPR001611 GO:0005515
Cmo07g01367 890 Pfam Leucine Rich Repeat 89 110 IPR001611 GO:0005515
Cmo07g01367 890 SUPERFAMILY L domain-like 50 247 - -
Cmo07g01367 890 Gene3D Ribonuclease Inhibitor 230 520 IPR032675 -
Cmo07g01367 890 SUPERFAMILY Protein kinase-like (PK-like) 611 887 IPR011009 -
Cmo07g01367 890 CDD STKc_IRAK 618 887 - -
Cmo07g01367 890 ProSitePatterns Tyrosine protein kinases specific active-site signature. 732 744 IPR008266 GO:0004672|GO:0006468
Cmo07g01367 890 ProSiteProfiles Protein kinase domain profile. 609 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo07g01367 890 SMART LRR_typ_2 134 157 IPR003591 -
Cmo07g01367 890 SMART LRR_typ_2 86 109 IPR003591 -
Cmo07g01367 890 SMART LRR_typ_2 206 230 IPR003591 -
Cmo07g01367 890 SMART LRR_typ_2 326 350 IPR003591 -
Cmo07g01367 890 SMART LRR_typ_2 110 133 IPR003591 -
Cmo07g01367 890 SMART LRR_typ_2 447 470 IPR003591 -
Cmo07g01367 890 SMART LRR_typ_2 374 398 IPR003591 -
Cmo07g01367 890 Pfam Leucine rich repeat 328 387 IPR001611 GO:0005515
Cmo07g01367 890 SUPERFAMILY RNI-like 195 489 - -
Cmo07g01367 890 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 888 - -
Cmo07g01367 890 Gene3D Phosphorylase Kinase; domain 1 581 687 - -
Cmo07g01367 890 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 8 888 - -
Cmo07g01367 890 Gene3D Transferase(Phosphotransferase) domain 1 688 890 - -
Cmo07g01367 890 PRINTS Leucine-rich repeat signature 353 366 - -
Cmo07g01367 890 PRINTS Leucine-rich repeat signature 447 460 - -
Cmo07g01367 890 Pfam Protein kinase domain 613 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00065 Cmo07g01367 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01367 Cmo-Chr7:7748464 Cmo06g01278 Cmo-Chr6:9649766 7.75E-64 dispersed
Cmo01g00969 Cmo-Chr1:6200618 Cmo07g01367 Cmo-Chr7:7748464 3.98E-153 transposed
Cmo03g00065 Cmo-Chr3:1052989 Cmo07g01367 Cmo-Chr7:7748464 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74503 PF00069 Pkinase 2.40E-26 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01367 - - csv:101215786 1570.44