Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01384 ATGGCGGAGTACGATCTAACTCCGCGAATCGCTCCAAATTTGGACCGTCATCTTGTTTTCCCTCTCCTCGAGTTCCTTCAAGAGAGGCAGTTTTACCATGACGAGCAGATCCTCAAGGCCAAAATCGAGCTTCTCAACAGGACCAATATGGTTGATTACGCCATGGACATTCACAAGTCGCTGTATCACACCGACGATGTTCCTCAAGGCATGGCCATATCTTGGGTGGAAGTGGTGACGAGGCTTAAGGCTTTGGAGGAGTCCGCGGCGCCACTTGTTGCTTTTCTGCAGAATCCGGCTGCTGTTCAGGAACTGAGGGCTGATAAGCAGTACAATCTTCAAATGCTTAATGATCGTTATCAGATTGGTCCAGATCAAATAGAAGCGTTATACCAATATGCCAAATTTCAGTTCGAGTGTGGGAACTACTCTGGTGCTGCTGACTATCTCTATCAGTACAGAGCCTTATGCACAGACAGTGAAAGGAGCTTGAGTGCTCTATGGGGAAAATTGGCAGCTGAAATTTTAATGCAGAATTGGGATATTGCTGTAGAGGAGCTTAATCGTTTGAAAGAGATTATCGACTCTAAGAATTTCTCATCATCTATGAAACAAGTGCAAGGCAGAATATGGTTGATGCATTGGAGCCTCTTCATATTTTTCAATCACGACAATGGAAGAACACAGATAATTGACCTGTTTAATCAAGATAAGTATTTAAATGCCATTCAAACCAATGCTCCCCATCTTTTACGCTATTTGGCCACTGCTTTCATTGTTAACAAAAGGCGGCGGCCACAATTCAAAGATTTTATCAAGGTTATTCAGCAGGAACAATATTCCTATAATGATCCCATCACAGAGTTTTTGACTTGTGTGTATGTCAATTATGATTTCGATGGGGCACAAAAGAAGATGAGGGAGTGCGAAGAAGTTATATTGAACGATCCTTTCCTAGGAAAGAGGATTGAAGAAGGTAACCTTTCCACCGTTCCTTTGAGAGATGAGTTTTTGGAAACTGCTCGTCTGTTCGTCTTTGAGACTTTCTGCAGAATACATCAGCGTATTGATATGAGCGTCCTTGCTGAAAAGTTGAACTTGAATTATGAGGAAGCTGAGCAGTGGATTGTAAATCTCGTGCGCACGTCAAAGCTTGATGCGAAGATTGATTCAAAGACGGGAACAGTTATAATGGAAACGAACAAGCCTGATGTGCATGAGCAATTGATCGACCACACGAAGTCATTATCTGGGCGTACTTACAAGTTAGTGACCCAACTTCTAGAGCATGCACAGGCCCAAGCAGCTAGATAA 1314 43.0 MAEYDLTPRIAPNLDRHLVFPLLEFLQERQFYHDEQILKAKIELLNRTNMVDYAMDIHKSLYHTDDVPQGMAISWVEVVTRLKALEESAAPLVAFLQNPAAVQELRADKQYNLQMLNDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTDSERSLSALWGKLAAEILMQNWDIAVEELNRLKEIIDSKNFSSSMKQVQGRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQYSYNDPITEFLTCVYVNYDFDGAQKKMRECEEVILNDPFLGKRIEEGNLSTVPLRDEFLETARLFVFETFCRIHQRIDMSVLAEKLNLNYEEAEQWIVNLVRTSKLDAKIDSKTGTVIMETNKPDVHEQLIDHTKSLSGRTYKLVTQLLEHAQAQAAR 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 7910102 7913599 + CmoCh07G013840.1 Cmo07g01384 386692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01384 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cmo07g01384 437 SUPERFAMILY Winged helix DNA-binding domain 333 403 IPR036390 -
Cmo07g01384 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cmo07g01384 437 Pfam PCI domain 285 399 IPR000717 -
Cmo07g01384 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Cmo07g01384 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 - -
Cmo07g01384 437 SUPERFAMILY TPR-like 120 192 IPR011990 GO:0005515
Cmo07g01384 437 SMART PINT_4 332 416 IPR000717 -
Cmo07g01384 437 Gene3D - 130 433 - -
Cmo07g01384 437 SMART eIF3_N_2 5 137 IPR019010 -
Cmo07g01384 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Cmo07g01384 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Cmo07g01384 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00041 Cmo-Chr3:751691 Cmo07g01384 Cmo-Chr7:7910102 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01384 K03250 - csv:101205199 815.453