Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo07g01403 ATGGGATCTTCTGTTGCTGCAATGGGCATGGTTTCCGACTCCAAATTCCATGTTCTTGCTGTTGATGACAGCGTCATCGATCGGAAATTGATTGAGCGTCTCCTTAAAACCTCCTCTTTTCAAGTAACTACGGTTGATTCTGGGAGTAAGGCTTTGGAGTTTTTGGGGTATGATCCTGGAAATAACTCGATTCCCTATGTTTCTCCTAACCACCACCACCACCACCACCACCACCACCATCATCATCATCATCAGGAAGTGGATGTGAATCTTGTTATTACTGATTACTGTATGCCTGGGATGACTGGCTATGATTTGTTGAAGAAGATCAAGGGGTCCAAGGCTCTGAGAAACATACCTGTTGTGATTATGTCATCTGAGAATGTACCTGCAAGAATCAATAGATGTTTAGAAGAAGGAGCAGAAGAGTTCTTCTTGAAACCGGTCCGACTTTCGGACGTCAACAGGCTTAAACCCCACATGTTGAAAACCAAACTCAAATGTGGCAAACCAGAAAGAACAGAGGAAGATGAGCCTGATTCAGGAAGCCAATCCCAAGCACCAGAGCAACAACATCATGAACAACAAGAACAATTGCAATCGCAGCAGGTGCCAACACCGCTGCAAGATCAAGATCAAGATCAATTGCCATCCGTGCCAGTGTTACCAACGCCGCAACAGGAGCAAGAACAGTTGCAATTGCTCCCGCCAACACCTCCGCAACAATCGAACAACAACAACAACAACAAGAGGAAGGCAATGGAAGATGGACTTTCACCAGATAGAACAAGGCGTAGATACAATGGTATTACAACCATGGTGTAG 825 45.09 MGSSVAAMGMVSDSKFHVLAVDDSVIDRKLIERLLKTSSFQVTTVDSGSKALEFLGYDPGNNSIPYVSPNHHHHHHHHHHHHHHQEVDVNLVITDYCMPGMTGYDLLKKIKGSKALRNIPVVIMSSENVPARINRCLEEGAEEFFLKPVRLSDVNRLKPHMLKTKLKCGKPERTEEDEPDSGSQSQAPEQQHHEQQEQLQSQQVPTPLQDQDQDQLPSVPVLPTPQQEQEQLQLLPPTPPQQSNNNNNNKRKAMEDGLSPDRTRRRYNGITTMV 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 8052325 8054473 - CmoCh07G014030.1 Cmo07g01403 386711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo07g01403 274 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 272 IPR045279 GO:0009736
Cmo07g01403 274 SMART REC_2 16 161 IPR001789 GO:0000160
Cmo07g01403 274 Pfam Response regulator receiver domain 83 153 IPR001789 GO:0000160
Cmo07g01403 274 CDD REC_typeA_ARR 18 157 - -
Cmo07g01403 274 MobiDBLite consensus disorder prediction 181 253 - -
Cmo07g01403 274 ProSiteProfiles Response regulatory domain profile. 17 162 IPR001789 GO:0000160
Cmo07g01403 274 MobiDBLite consensus disorder prediction 165 180 - -
Cmo07g01403 274 SUPERFAMILY CheY-like 14 157 IPR011006 -
Cmo07g01403 274 MobiDBLite consensus disorder prediction 165 274 - -
Cmo07g01403 274 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR9-LIKE 11 272 - -
Cmo07g01403 274 Gene3D - 17 263 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00167 Cmo07g01403 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00318 Cmo-Chr4:1580019 Cmo07g01403 Cmo-Chr7:8052325 1.76E-53 dispersed
Cmo07g01403 Cmo-Chr7:8052325 Cmo15g00865 Cmo-Chr15:4388575 3.16E-68 dispersed
Cmo15g00681 Cmo-Chr15:3335966 Cmo07g01403 Cmo-Chr7:8052325 5.12E-33 dispersed
Cmo04g01404 Cmo-Chr4:7166482 Cmo07g01403 Cmo-Chr7:8052325 9.50E-67 transposed
Cmo14g00521 Cmo-Chr14:2633524 Cmo07g01403 Cmo-Chr7:8052325 1.37E-79 transposed
Cmo03g00167 Cmo-Chr3:2501963 Cmo07g01403 Cmo-Chr7:8052325 1.06E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10193 PF00072 Response_reg 4.50E-14 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo07g01403 K14492 - csv:101220999 353.214