Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00001 ATGGATTTTCTCACAAAATCAAAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGAAGAAGAAATCCCGACTGTTGCATGCGATTTCTTCACAAATTCCCACTCTCAAAACCACCACCACTGCCTTCAACACCCTCCAAATCACTCCCAAAATCAGCACCCTCCCATGGACTTGTCCCTCAGAATTGACTCCAACAACAATGGGTTTGCGGTTGAGAGAGAGCACATGTTCGACAAAGTGGTCACTCCAAGCGATGTCGGAAAATTAAACCGTCTTGTCATCCCAAAGCAACACGCCGAAAAATACTTCCCTCTCAACTCAACAACCAACGACAAGGGCCTCATCTTGAACTTCGAGGACCGTAACGGCAAACCCTGGCGCTTCCGTTACTCCTACTGGAACAGCAGCCAGAGCTACGTGATGACAAAAGGCTGGAGCCGTTTTGTCAAAGACAAGAAATTGGATGCAGGCGACGTGGTTTCCTTCCAGCGTGGCGTTGGCGATTTCGCCAAGGACCGCCTTTTCATTGACTGGCGCCACCGTTCCGACACATCTCGCCCTCACCCACTCCTCCTCCTCCCACAGTCTCTTCGGTGGGCATCTGACCGCCACTTTACTACTCTCCCACCTCCGCCGCCACTGCAGCCCAGACGAACCCACCACCATCTCTATCCCAATTACGCCTTACAAATGTCAAATTTGGGGATGGGCAGTCACGGTAGTAATAATAATTCTTCCATGTATTATTTTCAACCCTCCATTTCCTCTTCTACTTCCTCCTCTCTCTATAGGATGCGGAATGGGGATGGGATTGTGGTAAATAATGAAGGGTCTTCGATGGGGATTAACAAAGGCGGCTCCGGCGGCACGACCCTCAAACGACTCCGCCTGTTTGGAGTGAATATGGAGTGTGCTGCAGCTGATGGAGAAGGAGAACATGATGTTCCAAACGGCGGCGTTTCGAGGAGAGGGAAAGAGCCCTTGCCGTTGAATTGGGATGAGTGA 1029 50.15 MDFLTKSKQEEEEEEEEEEEEEEEEEEEEIPTVACDFFTNSHSQNHHHCLQHPPNHSQNQHPPMDLSLRIDSNNNGFAVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLNSTTNDKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFQRGVGDFAKDRLFIDWRHRSDTSRPHPLLLLPQSLRWASDRHFTTLPPPPPLQPRRTHHHLYPNYALQMSNLGMGSHGSNNNSSMYYFQPSISSSTSSSLYRMRNGDGIVVNNEGSSMGINKGGSGGTTLKRLRLFGVNMECAAADGEGEHDVPNGGVSRRGKEPLPLNWDE 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13601 14629 - CmoCh08G000010.1 Cmo08g00001 386734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00001 342 MobiDBLite consensus disorder prediction 44 65 - -
Cmo08g00001 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 19 316 - -
Cmo08g00001 342 MobiDBLite consensus disorder prediction 1 30 - -
Cmo08g00001 342 SMART B3_2 85 190 IPR003340 GO:0003677
Cmo08g00001 342 ProSiteProfiles B3 DNA-binding domain profile. 85 190 IPR003340 GO:0003677
Cmo08g00001 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 316 IPR044800 GO:0003700
Cmo08g00001 342 Coils Coil 1 30 - -
Cmo08g00001 342 Pfam B3 DNA binding domain 85 189 IPR003340 GO:0003677
Cmo08g00001 342 SUPERFAMILY DNA-binding pseudobarrel domain 82 173 IPR015300 -
Cmo08g00001 342 Gene3D - 78 197 IPR015300 -
Cmo08g00001 342 MobiDBLite consensus disorder prediction 9 30 - -
Cmo08g00001 342 MobiDBLite consensus disorder prediction 316 342 - -
Cmo08g00001 342 CDD B3_DNA 83 172 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00001 Cmo-Chr8:13601 Cmo17g00535 Cmo-Chr17:5282653 7.42E-131 dispersed
Cmo08g00001 Cmo-Chr8:13601 Cmo16g00647 Cmo-Chr16:3189084 5.56E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10195 PF02362 B3 1.50E-28 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00001 - - cmos:111436350 384.415