Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00010 ATGGGCTGTTTTCCCTGTTTCGATTCGAGGGAAGAGGAGAAGCTGAATCCCGAAAAGGAAAGCGATGATGGTAAGCAACACCATCCAATGATTCCACCCAACATTGCCAAATTGCCTTCTGGAATAGACAAACTTAGATCAAAAGGCAATGGTGGTTCCAAAAGGGAACAGCAGAATCCCAAGGATGGGCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAGCTTGCAATCGCAACCAAGAATTTTAGACCTGAGTGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGCCTCGAAAGCTCAGGCCAGATTGTTGCTGTAAAACAGTTGGATAGGAATGGTCTTCAAGGAAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCAGATGGGGATCAACGGCTTCTTGTATATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCATGAAATTCCACCTGATAAGGAACCCCTAGATTGGAACACAAGAATGAAAATAGCTGCTGGTGCAGCCAGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGATGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGAACTTATGGTTACTGTGCTCCCGAGTACGCCATGACCGGACAATTGACCGTCAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTGATAACTGGACGGAGAACCATTGATAGCACCCGGCCCCAAGGCGAACAGAACCTTGTCACATGGGCACGCCCATTTTTTAATGACCGCAGAAGATTCTCAAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTGTACCAGGCTCTAGCTGTGGCATCCATGTGTACCCAAGAACAGGCTGCAGCCCGTCCGCTGATTGGAGACGTGGTCACTGCCCTGTCATACTTGGCAAATCAATCCTACGATCCAAGTTCTCCTTCAGGTACTGCTGCTGCTGCTCAGAGAGGTTCTGGTGATCGGGACGAAAGACGGAACAGAGACGAGAAAGTTGCAGTAAAGAATGAAGACGGGGGAGCATGTGAACGAAGGTGGACGTTGGATGGTCCGGGGAAGGACGAGTCCCCAAGGGAGAATGGTAGGATTTTGAATAAGGATTCAGAGAGAGAACGTGCAGTGGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGGCGACAGAGCGCACAAGGCAGTTTTGATGGTTCGAATGGGTAA 1398 47.14 MGCFPCFDSREEEKLNPEKESDDGKQHHPMIPPNIAKLPSGIDKLRSKGNGGSKREQQNPKDGPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESSGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRTIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAAQRGSGDRDERRNRDEKVAVKNEDGGACERRWTLDGPGKDESPRENGRILNKDSERERAVAEAKMWGENWREKRRQSAQGSFDGSNG 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 55204 59117 + CmoCh08G000100.1 Cmo08g00010 386743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00010 465 Pfam Protein kinase domain 90 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00010 465 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00010 465 PANTHER OS07G0668900 PROTEIN 1 460 - -
Cmo08g00010 465 MobiDBLite consensus disorder prediction 52 66 - -
Cmo08g00010 465 MobiDBLite consensus disorder prediction 366 435 - -
Cmo08g00010 465 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 460 - -
Cmo08g00010 465 CDD STKc_IRAK 91 359 - -
Cmo08g00010 465 MobiDBLite consensus disorder prediction 7 27 - -
Cmo08g00010 465 SUPERFAMILY Protein kinase-like (PK-like) 62 359 IPR011009 -
Cmo08g00010 465 Gene3D Phosphorylase Kinase; domain 1 48 161 - -
Cmo08g00010 465 MobiDBLite consensus disorder prediction 1 66 - -
Cmo08g00010 465 MobiDBLite consensus disorder prediction 382 435 - -
Cmo08g00010 465 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Cmo08g00010 465 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
Cmo08g00010 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00010 Cmo-Chr8:55204 Cmo14g01676 Cmo-Chr14:13208212 0 dispersed
Cmo14g01157 Cmo-Chr14:9114048 Cmo08g00010 Cmo-Chr8:55204 8.23E-86 dispersed
Cmo16g00903 Cmo-Chr16:5382706 Cmo08g00010 Cmo-Chr8:55204 7.46E-163 dispersed
Cmo17g01232 Cmo-Chr17:9771637 Cmo08g00010 Cmo-Chr8:55204 1.55E-176 dispersed
Cmo17g01367 Cmo-Chr17:10614486 Cmo08g00010 Cmo-Chr8:55204 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74506 PF00069 Pkinase 4.00E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00010 K13430 - csv:101219880 882.478