Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00033 ATGGCTGACGGTCATGAAACTGATAAGAACATTGAAATATGGAAAATTAAGAAGTTGATTAAAGCACTTGAAGCTGCTAGAGGAAATGGGACTAGTATGATATCTCTTATCATGCCTCCGCGTGATCAAATATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAACATTAAGAGCAGGGTGAATCGCCAATCTGTTTTGGGTGCTATCACATCTGCTCAGCAGAGACTCAAGCTGTATAGCAAAGTTCCTCCGAATGGGCTTGTGCTTTATACTGGGACTATCGTGACTGAAGATGGAAAAGAAAAGAAAGTCACTATTGATTTTGAACCTTTCAGACCTATAAATGCATCTCTGTATCTCTGTGACAATAAGTTCCATACGGAAGCCCTGAATGAACTTTTAGAATCTGATGACAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGTACATTGAGTGGTAACACACGTGAGGTTCTTCACAAATTTAGTGTTGACCTTCCTAAAAAACATGGAAGAGGAGGTCAATCAGCACTTAGGTTTGCCCGTCTTCGGATGGAGAAGCGGCACAACTATGTCAGGAAAACAGCAGAGCTTGCAACCCAGTTCTTTATTAATCCTGCCACTAGTCAACCTAATGTTGCAGGATTGATACTGGCTGGATCAGCCGACTTCAAAACAGAGCTCAGTCAATCAGACATGTTTGATCCTCGTCTTCAAACAAAAATACTTAATGTAGTTGATGTGTCTTATGGAGGAGAAAATGGATTTAATCAGGCCATTGAACTGTCCTCCGAGATCTTGTCTAATGTAAAATTTATACAGGAGAAGCGCTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACGGGGAAATATGTTTTTGGTGTTGATGACACACTGAAAGCTCTGGAGATGGGCGCTGTTGAGATACTCATTGTTTGGGAAAATTTGGATATCAACAGGTATGTTTTAAAGAATGCTTCCACTGGTGAGATTGTTATAAAGCACTTGAATAAGGAACAGGAGGCCAATCAGAGCAACTTCCGTGACTCCGTCACCTCTGCTGAGTTGGAGGTTCAAGAAAAGGTGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAACAGTTTGGTTGCACACTTGAGTTCGTCACCAACAAATCACAGGAAGGATCACAGTTCTGCAGGGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATGAGATCGTTTGATGAGCTATCTGATGGGGAAGAGTACGGTGATTCTGAATAG 1311 41.72 MADGHETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYSKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFRPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVAGLILAGSADFKTELSQSDMFDPRLQTKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVEILIVWENLDINRYVLKNASTGEIVIKHLNKEQEANQSNFRDSVTSAELEVQEKVALLEWFANEYKQFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDELSDGEEYGDSE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 170908 172218 + CmoCh08G000330.1 Cmo08g00033 386766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00033 436 Gene3D eRF1 domain 2 136 277 IPR042226 -
Cmo08g00033 436 SUPERFAMILY L30e-like 278 420 IPR029064 -
Cmo08g00033 436 Gene3D eRF1 domain 1 2 135 IPR024049 -
Cmo08g00033 436 Gene3D - 279 436 IPR029064 -
Cmo08g00033 436 SUPERFAMILY Translational machinery components 142 276 - -
Cmo08g00033 436 SMART eRF1_1_2 4 140 IPR005140 -
Cmo08g00033 436 Pfam eRF1 domain 1 18 138 IPR005140 -
Cmo08g00033 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 1 436 IPR004403 GO:0003747|GO:0006415
Cmo08g00033 436 Pfam eRF1 domain 3 281 418 IPR005142 -
Cmo08g00033 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Cmo08g00033 436 PANTHER EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1-3-LIKE 1 436 - -
Cmo08g00033 436 TIGRFAM aRF1/eRF1: peptide chain release factor 1, archaeal and eukaryotic forms 12 417 IPR004403 GO:0003747|GO:0006415
Cmo08g00033 436 Pfam eRF1 domain 2 144 277 IPR005141 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01343 Cmo-Chr17:10496950 Cmo08g00033 Cmo-Chr8:170908 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00033 K03265 - csv:101218139 831.632