Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00060 ATGGATCAGACACAGATTTGGTTTCCTCAAAATCATCAAAACTTTCTGTCTGATGATGACGACACTCTAATGTTCTACTCTGATTTCCCTCCGCTGTCGGATTTCCCTTGCATGTCATCGTCGTCGTCCTCGTCCTCGTCGTTGACTCCGGCTCCGGTCAAGGCTACAGCTTCCTCGCCGTCGACCTCCTCTTCCTCAACCACTTCATGGGCAATTTTGAAATCCGATGCTGAGGAACCCATTGAAGAAATACGAGTAAATGATAATAATAATTCCACCTCCGTTGCAGCCGCCATGTCATCGCCGCCGCCGCCGCCGGCGGAGACAGGGTTCAACGACGTTGATTGTACGGACGACATGATGATGATGGACACATTTGGATACATGAATTTAGTCGAAGACAGCAATGAGTTTTTTGATCCGACGTGTATTTTTCAAAATGAAGAACAAAAAGACCCTTTAGAGGATTTGCAATTGGAGAGCTTTGAAGAAGTGGTAATGGAGGATTTGATGATGATGCATGAAGAAGGTGGGAGTAAAATTGATGAGGGGAAGCAAAACGACGTCGTAGTGGAGGAGGAGGAGGATATGGCGAAGGTGTTTTTGGAGTGGTTGAGGAGTAATAAAGAGACGGTTTCTGCTGATGATTTGAGGAATGTTAGGATTAAAAAAGCCACTATTGACAGCGCCGCCCGCCGTCTCGGCGGCGGCAAGGAGGGAATGAAGCAGCTTTTGAAGCTTGTTCTTCAATGGGTTCAAACCAATCATCTTCACAAGAGGAAATTCAAAGACGAAGCGAATTTCTTAGGGTTTCAAGCTCCGCTGCCCTCTCCGCCGGTGATCGGTTATGCCCCGGCTGGCGGCGGAGATGCTTACGCCACCAGCCATGGTTTTTCTGATCACTACCAATTACTTGACTCCCCATTTGCGCCGTGTTTCAATTCATTCATTGACAATTTCACGGCGGGGCCACCTCCGTTACCGCTGCAACCCCATGGTATCGCAGCCGGGTACGGCGGTGGCCATCAGTACCACCCTTACATGGGTCAGTATTTTCAAGGGCAGGGTGGTGGTGGTGGTGGTGGTGATACTAGTTTAGTTAGGCTGGATTCCTCCGCCACGAAGGAGGCTCGGAAGAAGAGAATGGCGAGGCAGCGGCGATTTTCAGCTCACCACCGTCACGGTAGCCACCAGAATCAGCATCCGATTCAGATGAATACTAATGCTTCAGATCATTGCACCATGGCTACAACTGTTCAGCCCAATTCTACAAACTGGGTCTACTGGCCATCCCCCACCGGTGCTGGTTGTCCGGTGGACTCGTCTCCTGTATATTCTGTCGATCGGCTTAATCAGAACTTTCTACTGCCGATCCCGACGCACCGACGACAGGGATGGAAATCAGAGAAGAATTTGAGGTTTCTTTTACAGAAGGTGTTGAAGCAAAGCGATGTGGGAAATTTGGGGAGAATTGTATTGCCGAAGAAAGAAGCAGAAACTCATCTCCCAGAATTGGAGGCAAGAGATGGCATTTCCATTGCCATGGAAGATATTGGAACCTCCAAAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAACAAAAGCAGAATGTATCTGCTTGAAAACACAGGGGACTTTGTGAGAGCCAATGGCCTTCAAGAAGGAGATTTCATTGTCATCTACTCAGATGTCAAGTGTGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGACAGCAAAAGGCCGGGAAAGTTGCAGAGAAAGGGCTCGACATCTTCACCCACGGCGGTCGCGACCTTGAAAAGGCAGTGA 1833 48.83 MDQTQIWFPQNHQNFLSDDDDTLMFYSDFPPLSDFPCMSSSSSSSSSLTPAPVKATASSPSTSSSSTTSWAILKSDAEEPIEEIRVNDNNNSTSVAAAMSSPPPPPAETGFNDVDCTDDMMMMDTFGYMNLVEDSNEFFDPTCIFQNEEQKDPLEDLQLESFEEVVMEDLMMMHEEGGSKIDEGKQNDVVVEEEEDMAKVFLEWLRSNKETVSADDLRNVRIKKATIDSAARRLGGGKEGMKQLLKLVLQWVQTNHLHKRKFKDEANFLGFQAPLPSPPVIGYAPAGGGDAYATSHGFSDHYQLLDSPFAPCFNSFIDNFTAGPPPLPLQPHGIAAGYGGGHQYHPYMGQYFQGQGGGGGGGDTSLVRLDSSATKEARKKRMARQRRFSAHHRHGSHQNQHPIQMNTNASDHCTMATTVQPNSTNWVYWPSPTGAGCPVDSSPVYSVDRLNQNFLLPIPTHRRQGWKSEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSKVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPDSKRPGKLQRKGSTSSPTAVATLKRQ 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 360890 364997 + CmoCh08G000600.1 Cmo08g00060 386793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00060 610 SMART B3_2 476 578 IPR003340 GO:0003677
Cmo08g00060 610 MobiDBLite consensus disorder prediction 593 610 - -
Cmo08g00060 610 CDD BfiI_C_EcoRII_N_B3 474 575 - -
Cmo08g00060 610 ProSiteProfiles B3 DNA-binding domain profile. 476 578 IPR003340 GO:0003677
Cmo08g00060 610 SUPERFAMILY DNA-binding pseudobarrel domain 475 571 IPR015300 -
Cmo08g00060 610 MobiDBLite consensus disorder prediction 578 610 - -
Cmo08g00060 610 Pfam B3 DNA binding domain 477 573 IPR003340 GO:0003677
Cmo08g00060 610 Gene3D - 466 581 IPR015300 -
Cmo08g00060 610 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 591 - -
Cmo08g00060 610 MobiDBLite consensus disorder prediction 37 70 - -
Cmo08g00060 610 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 591 IPR044800 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00060 Cmo17g01215 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01268 Cmo-Chr3:9675571 Cmo08g00060 Cmo-Chr8:360890 8.00E-25 dispersed
Cmo07g00232 Cmo-Chr7:1161493 Cmo08g00060 Cmo-Chr8:360890 8.12E-34 dispersed
Cmo08g00060 Cmo-Chr8:360890 Cmo15g00809 Cmo-Chr15:4009382 1.34E-34 dispersed
Cmo17g01215 Cmo-Chr17:9708753 Cmo08g00060 Cmo-Chr8:360890 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10201 PF02362 B3 1.50E-17 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00060 - - cmax:111498106 1090.1