Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00072 ATGGAAAGACACGTCCTAAACCCAACCCCATTATCTTCCCATGACATAGGAACGATTAGAGAAAATACAAAAGGAAACCAAGTGCAAAATGAAGCAGAGAAAGAAAATGAGATTGGAGGAAAGAACAACATTGCAGCAAAAACCTTCACGTTCAGAGAGCTGGCCACTGCCACGAAGAATTTCCGCGAAGAGTGTCTGATCGGAGAGGGCGGGTTCGGGAGAGTTTACAAGGGCAAACTCGACAAAATTTCCCAGGTTGTAGCAGTGAAGCAGCTTGATAGGAATGGACTGCAAGGGAATAGAGAGTTCCTTGTGGAGGTTTTGATGCTAAGCCTTTTACACCATAAGAACCTTGTCAATCTCATTGGGTATTGTGCAGATGGTGATCAAAGACTCTTGGTCTATGAGTATATGCCTTTGGGATCTCTAGAGGATCATCTACTTGACCTTCCAGCGGATAGGAAGGCATTAGATTGGGCAACAAGAATGAAAGTAGCATTGGGAGCAGCAAAAGGGCTAGAGTACTTGCACGACAAAGCCAACCCACCTGTGATATATAGAGATTTGAAAGCATCAAACATTCTACTGGACAATGATTTCAATGCAAAGCTGTCGGATTTCGGGCTCGCAAAGCTTGGGCCTGTCGGGGACAAGTCCCATGTTTCCTCCAGGGTTATGGGAACCTATGGATATTGTGCTCCCGAGTATCAAAGAACAGGCCAGCTCACTCTCAAATCAGATGTCTACAGCTTTGGCGTCGTCTTGTTGGAACTCATCACCGGCAAGAGAGTCATCGACGACACTCGTCCAGCTAACCAGCAAAACCTGGTCGCTTGGGCATGCCCAATATTCAAGGAACCAACTAAATTCATGGACCTGGCCGATCCTCTTTTGGGTAGGGACTTCCCTGTGAAATCTCTAAACCAAGCCGTCGCGGTGGCTGCAATGTGCCTCCACGAGGAAGCGACGGTGCGACCATTGATCAGCGATGTCGTCACAGCTCTTAGCTTCTTGGGTGCAGAAGCCACGCACTCGTCGTCTTTGTCGTTGTCGTCGATCGATGATCCTTCATCGGTAGTATCTGATCAAAATTTGATCAACCAATCAAAATCCAACGACGAGGAAATAGCCGAGGCACGCCAGCGAGCAGTCGCCGAAGCCATCGAATGGGGTTCCTCCTCCAAGCAAAATGCCGCCGCCTCGCGCCGGGGAACCAAGACATCGCGCGCCTCTCTTCCGCGACCTTGCTTCTCAGGTTATCCGTCTCTTATTCCTGCTGATTTTGCTTCCTTGAGCAATTGA 1302 48.69 MERHVLNPTPLSSHDIGTIRENTKGNQVQNEAEKENEIGGKNNIAAKTFTFRELATATKNFREECLIGEGGFGRVYKGKLDKISQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHKNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPADRKALDWATRMKVALGAAKGLEYLHDKANPPVIYRDLKASNILLDNDFNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDDTRPANQQNLVAWACPIFKEPTKFMDLADPLLGRDFPVKSLNQAVAVAAMCLHEEATVRPLISDVVTALSFLGAEATHSSSLSLSSIDDPSSVVSDQNLINQSKSNDEEIAEARQRAVAEAIEWGSSSKQNAAASRRGTKTSRASLPRPCFSGYPSLIPADFASLSN 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 389249 393807 + CmoCh08G000720.1 Cmo08g00072 386805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00072 433 MobiDBLite consensus disorder prediction 393 413 - -
Cmo08g00072 433 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 23 399 - -
Cmo08g00072 433 Gene3D Phosphorylase Kinase; domain 1 27 137 - -
Cmo08g00072 433 SUPERFAMILY Protein kinase-like (PK-like) 47 353 IPR011009 -
Cmo08g00072 433 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Cmo08g00072 433 ProSiteProfiles Protein kinase domain profile. 61 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00072 433 SMART serkin_6 61 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00072 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Cmo08g00072 433 PANTHER OS07G0668900 PROTEIN 23 399 - -
Cmo08g00072 433 MobiDBLite consensus disorder prediction 1 36 - -
Cmo08g00072 433 Gene3D Transferase(Phosphotransferase) domain 1 138 354 - -
Cmo08g00072 433 CDD STKc_IRAK 67 335 - -
Cmo08g00072 433 Pfam Protein kinase domain 63 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00072 433 MobiDBLite consensus disorder prediction 393 412 - -
Cmo08g00072 433 MobiDBLite consensus disorder prediction 11 26 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00072 Cmo-Chr8:389249 Cmo06g01473 Cmo-Chr6:10592585 2.84E-174 dispersed
Cmo10g01091 Cmo-Chr10:6075279 Cmo08g00072 Cmo-Chr8:389249 3.11E-158 dispersed
Cmo11g00977 Cmo-Chr11:5180922 Cmo08g00072 Cmo-Chr8:389249 9.26E-157 dispersed
Cmo17g01232 Cmo-Chr17:9771637 Cmo08g00072 Cmo-Chr8:389249 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74509 PF00069 Pkinase 4.30E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00072 - - cmo:103497640 640.188