Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00072 | ATGGAAAGACACGTCCTAAACCCAACCCCATTATCTTCCCATGACATAGGAACGATTAGAGAAAATACAAAAGGAAACCAAGTGCAAAATGAAGCAGAGAAAGAAAATGAGATTGGAGGAAAGAACAACATTGCAGCAAAAACCTTCACGTTCAGAGAGCTGGCCACTGCCACGAAGAATTTCCGCGAAGAGTGTCTGATCGGAGAGGGCGGGTTCGGGAGAGTTTACAAGGGCAAACTCGACAAAATTTCCCAGGTTGTAGCAGTGAAGCAGCTTGATAGGAATGGACTGCAAGGGAATAGAGAGTTCCTTGTGGAGGTTTTGATGCTAAGCCTTTTACACCATAAGAACCTTGTCAATCTCATTGGGTATTGTGCAGATGGTGATCAAAGACTCTTGGTCTATGAGTATATGCCTTTGGGATCTCTAGAGGATCATCTACTTGACCTTCCAGCGGATAGGAAGGCATTAGATTGGGCAACAAGAATGAAAGTAGCATTGGGAGCAGCAAAAGGGCTAGAGTACTTGCACGACAAAGCCAACCCACCTGTGATATATAGAGATTTGAAAGCATCAAACATTCTACTGGACAATGATTTCAATGCAAAGCTGTCGGATTTCGGGCTCGCAAAGCTTGGGCCTGTCGGGGACAAGTCCCATGTTTCCTCCAGGGTTATGGGAACCTATGGATATTGTGCTCCCGAGTATCAAAGAACAGGCCAGCTCACTCTCAAATCAGATGTCTACAGCTTTGGCGTCGTCTTGTTGGAACTCATCACCGGCAAGAGAGTCATCGACGACACTCGTCCAGCTAACCAGCAAAACCTGGTCGCTTGGGCATGCCCAATATTCAAGGAACCAACTAAATTCATGGACCTGGCCGATCCTCTTTTGGGTAGGGACTTCCCTGTGAAATCTCTAAACCAAGCCGTCGCGGTGGCTGCAATGTGCCTCCACGAGGAAGCGACGGTGCGACCATTGATCAGCGATGTCGTCACAGCTCTTAGCTTCTTGGGTGCAGAAGCCACGCACTCGTCGTCTTTGTCGTTGTCGTCGATCGATGATCCTTCATCGGTAGTATCTGATCAAAATTTGATCAACCAATCAAAATCCAACGACGAGGAAATAGCCGAGGCACGCCAGCGAGCAGTCGCCGAAGCCATCGAATGGGGTTCCTCCTCCAAGCAAAATGCCGCCGCCTCGCGCCGGGGAACCAAGACATCGCGCGCCTCTCTTCCGCGACCTTGCTTCTCAGGTTATCCGTCTCTTATTCCTGCTGATTTTGCTTCCTTGAGCAATTGA | 1302 | 48.69 | MERHVLNPTPLSSHDIGTIRENTKGNQVQNEAEKENEIGGKNNIAAKTFTFRELATATKNFREECLIGEGGFGRVYKGKLDKISQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHKNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPADRKALDWATRMKVALGAAKGLEYLHDKANPPVIYRDLKASNILLDNDFNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGKRVIDDTRPANQQNLVAWACPIFKEPTKFMDLADPLLGRDFPVKSLNQAVAVAAMCLHEEATVRPLISDVVTALSFLGAEATHSSSLSLSSIDDPSSVVSDQNLINQSKSNDEEIAEARQRAVAEAIEWGSSSKQNAAASRRGTKTSRASLPRPCFSGYPSLIPADFASLSN | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 389249 | 393807 | + | CmoCh08G000720.1 | Cmo08g00072 | 386805 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00072 | 433 | MobiDBLite | consensus disorder prediction | 393 | 413 | - | - | |
Cmo08g00072 | 433 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED | 23 | 399 | - | - | |
Cmo08g00072 | 433 | Gene3D | Phosphorylase Kinase; domain 1 | 27 | 137 | - | - | |
Cmo08g00072 | 433 | SUPERFAMILY | Protein kinase-like (PK-like) | 47 | 353 | IPR011009 | - | |
Cmo08g00072 | 433 | ProSitePatterns | Protein kinases ATP-binding region signature. | 67 | 90 | IPR017441 | GO:0005524 | |
Cmo08g00072 | 433 | ProSiteProfiles | Protein kinase domain profile. | 61 | 338 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo08g00072 | 433 | SMART | serkin_6 | 61 | 338 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo08g00072 | 433 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 184 | 196 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo08g00072 | 433 | PANTHER | OS07G0668900 PROTEIN | 23 | 399 | - | - | |
Cmo08g00072 | 433 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cmo08g00072 | 433 | Gene3D | Transferase(Phosphotransferase) domain 1 | 138 | 354 | - | - | |
Cmo08g00072 | 433 | CDD | STKc_IRAK | 67 | 335 | - | - | |
Cmo08g00072 | 433 | Pfam | Protein kinase domain | 63 | 276 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo08g00072 | 433 | MobiDBLite | consensus disorder prediction | 393 | 412 | - | - | |
Cmo08g00072 | 433 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00072 | Cmo-Chr8:389249 | Cmo06g01473 | Cmo-Chr6:10592585 | 2.84E-174 | dispersed | |
Cmo10g01091 | Cmo-Chr10:6075279 | Cmo08g00072 | Cmo-Chr8:389249 | 3.11E-158 | dispersed | |
Cmo11g00977 | Cmo-Chr11:5180922 | Cmo08g00072 | Cmo-Chr8:389249 | 9.26E-157 | dispersed | |
Cmo17g01232 | Cmo-Chr17:9771637 | Cmo08g00072 | Cmo-Chr8:389249 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74509 | PF00069 | Pkinase | 4.30E-46 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00072 | - | - | cmo:103497640 | 640.188 |