Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00081 ATGGGATCATGTCTCTCTGGGGAGCGCAAGAACCGAAAGATCGTTTATTCTGAGATCGCTTCCACTTCTCATAATGATGCCGTTTTTACCCGAAAGAGCTCCAGGAGGAAGATTACGAGAAGAGGTTGTCCCGTTGATGACGCTACAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGATCAACTGATAATGCGACGCTCTTTACTAGGCAAGGCAAGAAAGGCGTTAATCAGGACGCTATGATTGTCTGGGAGAATTTTGGTTCAAAAGAAGATGCAACCTTTTGTGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAGTGCTCAGTGGGAATTGGACGCTACCAGAGGGAATGGGCAAACTGAGGCGAGATGTCGAGTCTCTCCACCAACGCTGATTAACAAGGACTCTGAAATCTCTCATTGTGATCTTGCTCGTCAGGACGGTTACAATGACATGTATGTCAACTTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCTCATATTGATTGCTTTTCCAGTGGTACAACATCAGTTGCTTTGGTCAAACAGGGTCGGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACCAGAGATAAATCTAACTCTCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAGTGAGCCTCAGATTTTTCGGGTTTGGCTTCCCAACAGTGATTGTCCTGGTCTTGCTATGGCCAGAGCCTTTGGAGATTTCTGTTTAAAAGACTTTGGCTTGATAGCCGTTCCTGACGTTTCTTATTATCATCTTTCTGAGAAAGATGAATTTGTGGTACTGGCTACAGATGGGGTTTGGGATGTTCTCTCAAATGAAGAGGTTGTGGCAACTGTTGCATCTTCCCCAAGATCCTCTGCAGCTCGTAACCTTGTGGATTCAGCTACTCGAGCTTGGAGATGTAAGTACCCTGCTGCCAAGGTGGATGATTGTGCTGTAGTCTGCCTGTTCCTGAACTCTAGTGAGACCACTACAGCGATACCTAAAGAGCAGGAGTTCACTGAGGAAATGGAAACTAAGTTCTCTTAA 1215 45.19 MGSCLSGERKNRKIVYSEIASTSHNDAVFTRKSSRRKITRRGCPVDDATREMSLHRVPGRMFLNGSTDNATLFTRQGKKGVNQDAMIVWENFGSKEDATFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQWELDATRGNGQTEARCRVSPPTLINKDSEISHCDLARQDGYNDMYVNLKESFLKAFKVMDKELKLHPHIDCFSSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDKSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQSEPQIFRVWLPNSDCPGLAMARAFGDFCLKDFGLIAVPDVSYYHLSEKDEFVVLATDGVWDVLSNEEVVATVASSPRSSAARNLVDSATRAWRCKYPAAKVDDCAVVCLFLNSSETTTAIPKEQEFTEEMETKFS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 420886 425314 + CmoCh08G000810.1 Cmo08g00081 386814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00081 404 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 388 - -
Cmo08g00081 404 SUPERFAMILY PP2C-like 70 381 IPR036457 -
Cmo08g00081 404 Pfam Protein phosphatase 2C 83 358 IPR001932 -
Cmo08g00081 404 PANTHER ALPHABET, ISOFORM E-RELATED 1 388 - -
Cmo08g00081 404 CDD PP2Cc 75 380 IPR001932 -
Cmo08g00081 404 SMART PP2C_4 58 378 IPR001932 -
Cmo08g00081 404 Gene3D - 64 383 IPR036457 -
Cmo08g00081 404 ProSiteProfiles PPM-type phosphatase domain profile. 69 380 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01764 Cmo-Chr1:13087240 Cmo08g00081 Cmo-Chr8:420886 6.02E-90 dispersed
Cmo05g00859 Cmo-Chr5:5570993 Cmo08g00081 Cmo-Chr8:420886 5.53E-167 dispersed
Cmo08g00081 Cmo-Chr8:420886 Cmo11g00953 Cmo-Chr11:5012030 3.01E-161 dispersed
Cmo17g00575 Cmo-Chr17:5906993 Cmo08g00081 Cmo-Chr8:420886 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00081 - - csv:101222320 645.966