Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00086 ATGAAGAACTCGGAGTCTGGTAGGCATTTGCTAGTGGCTTATGCTCCTCCTCCTGATAACATTTTTCATCCAGCGAACAAAAGTACGAATAATCGACAGCAAAGGAAGAAAGTGAGAATGCGCAAGTGGTTTTGTTGTTTTTGTCAAGTTGAAGAGACTAATGAGTCAACTGAAAATGAGCACTTGAAAAGCCCCACTAATTTTGGAGATGGCCACTCAAAGGGCCCAAACGTGTCAGCGCCTGTTAAACCTGAGGCACAAAAGGCAGCACCAACAATTGAAGTGCCTGCACTCTCCCTGGATGAACTGAAAGAAAAGACAGATAATTTTGGGTCGAAAGCATTGATTGGAGAAGGATCTTATGGTAGAGTTTACTATGCAAGCTTGAATAATGGGAAAAATGTAGCTGTAAAAAAGCTCGATGTTTCCTCTGAGCCTGACAGTAACATTGAGTTTTTGACCCAGGTTTCTACGGTATCAAGATTGAAACATGAAAATTTTGTTGAATTGCTTGGATATTGTGTTGAAGGAAGTCTTCGTGTATTGGCATATGAATATGCAACCATGGGATCTTTGCATGATGTGTTACATGGAAGGAAGGGAGTACAAGGAGCACAACCTGGTCCAGTGCTCGACTGGATGCAGCGAGTGAGAATTGCAGTTGATGCTGCCAAAGGACTGGAATACTTGCATGAGAAGGTTCAACCTGCTATTATACACCGAGATATCAGGTCCAGCAATGTGCTTCTCTTTGAGGATTTTAAAGCGAAGATAGCTGATTTTAACCTCTCCAATCAAGCCCCTGATATGGCAGCCCGTCTTCATTCAACTCGAGTTTTGGGAACTTTTGGTTACCATGCTCCAGAGTATGCAATGTCTGGACAGTTGACACAGAAGAGTGATGTATACAGCTTTGGTGTAGTTCTACTTGAGCTTTTGACTGGTAGGAAACCTGTCGATCACACGATGCCCCGTGGACAGCAAAGTTTAGTTACCTGGGCTACCCCAAGGCTAAGCGAGGACAAAGTGAAGCAATGTGTAGATCCAAGACTAAAGGGTGAATACCCTCCTAAAGGAATTGCGAAGCTAGCAGCAGTGGCTGCATTGTGTGTACAGTACGAATCTGAGTTCCGACCAAATATGAGCATCGTTGTGAAAGCCCTCCAACCTCTTTTGAAGCCCCCCGCACCTACCGGTCCCCCTGCGCCAGTGTCTTGA 1218 44.66 MKNSESGRHLLVAYAPPPDNIFHPANKSTNNRQQRKKVRMRKWFCCFCQVEETNESTENEHLKSPTNFGDGHSKGPNVSAPVKPEAQKAAPTIEVPALSLDELKEKTDNFGSKALIGEGSYGRVYYASLNNGKNVAVKKLDVSSEPDSNIEFLTQVSTVSRLKHENFVELLGYCVEGSLRVLAYEYATMGSLHDVLHGRKGVQGAQPGPVLDWMQRVRIAVDAAKGLEYLHEKVQPAIIHRDIRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMSGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPRLKGEYPPKGIAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKPPAPTGPPAPVS 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 442225 446934 - CmoCh08G000860.1 Cmo08g00086 386819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00086 405 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Cmo08g00086 405 ProSitePatterns Tyrosine protein kinases specific active-site signature. 238 250 IPR008266 GO:0004672|GO:0006468
Cmo08g00086 405 SMART tyrkin_6 110 388 IPR020635 GO:0004713|GO:0006468
Cmo08g00086 405 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 26 394 - -
Cmo08g00086 405 SUPERFAMILY Protein kinase-like (PK-like) 91 388 IPR011009 -
Cmo08g00086 405 ProSiteProfiles Protein kinase domain profile. 110 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00086 405 Pfam Protein tyrosine and serine/threonine kinase 115 388 IPR001245 GO:0004672|GO:0006468
Cmo08g00086 405 Gene3D Transferase(Phosphotransferase) domain 1 188 395 - -
Cmo08g00086 405 CDD STKc_IRAK 116 391 - -
Cmo08g00086 405 PANTHER PTI1-LIKE TYROSINE-PROTEIN KINASE 3 26 394 - -
Cmo08g00086 405 Gene3D Phosphorylase Kinase; domain 1 81 186 - -
Cmo08g00086 405 MobiDBLite consensus disorder prediction 56 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00086 K13436 PTI1; pto-interacting protein 1 [EC:2.7.11.1] - csv:101221382 652.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01634 Cmo08g00086 CCT
Cmo08g00086 Cmo14g01526 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00271 Cmo-Chr1:1260939 Cmo08g00086 Cmo-Chr8:442225 1.47E-174 dispersed
Cmo06g00105 Cmo-Chr6:602012 Cmo08g00086 Cmo-Chr8:442225 2.51E-178 dispersed
Cmo06g01634 Cmo-Chr6:11395678 Cmo08g00086 Cmo-Chr8:442225 0 dispersed
Cmo08g00086 Cmo-Chr8:442225 Cmo14g01526 Cmo-Chr14:12203277 0 dispersed
Cmo17g00572 Cmo-Chr17:5867772 Cmo08g00086 Cmo-Chr8:442225 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1140 . . . . . . . Bma05g01241 Cmo08g00086 . Cma06g01635 Cma14g01489 Car06g01390 Car14g01325 . Cpe08g00093 Cpe03g01253 Bhi01g02647 . . . . . . . . . . . . . . . Cone18ag0891 . . . . Cme07g01866 Blo02g00458 Blo07g00096 Bda11g00468 Bda13g00238 . Bpe13g00714 Bma02g00954 Bma06g01451 . Cmo06g01634 Cmo14g01526 . . Car08g00069 . . Cpe17g00994 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000194 4 9 5 8 6 5 8 4 4 5 5 3 9 5 3 9 4 2 6 5 5 6 4 3 4 5 4 0 1 4 145
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74510 PF07714 PK_Tyr_Ser-Thr 1.00E-46 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00086 Cmo_Chr08 FPKM 22.223845 31.338146 22.852375 25.017458 101.259506 90.300499 92.748146 25.204802 23.658026 23.148834
Cmo08g00086 Cmo_Chr08 FPKM 102.569351 113.64695 37.496052 41.615959 262.723022 280.648743 257.764313 18.859154 17.585207 18.366823
Cmo08g00086 Cmo_Chr17 FPKM 103.20681 113.460152 45.874298 46.744831 329.620972 308.660004 321.530212 19.376343 17.877922 15.004442
Cmo08g00086 Cmo_Chr20 FPKM 109.068123 123.119293 77.125786 82.34584 406.846558 300.576996 382.65213 8.509349 10.269275 12.174199