Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00091 ATGAAGAAGGTCTTTGGTCAGACTGTCAGGGATATCAAGAGAGAGGTCAATAAGACGGTGCTTAAAGTTCCTCGATTGGAGCAGAAGGTTCTTGATGCTACTAGCAATGAGCCTTGGGGCCCCCATGGAACACTTCTTGCAGAGATTGCTCAAGCAAGCAAAAATTATCATGAGTGTCAGATGATCATGGCAGTTATTTGGAAGCGTGTTAATGACTCTGGCAAAAATTGGCGGCATGTATACAAGGGTTTAACTGTCTTGGAGTATCTGGTGGCTCATGGATCCGAACGAGTAATAGACGAAATCAAGGATCATGCATACCAATTATCAGGCTTGTCCAGCTTTCAATATATTGATTCCAGTGGAAGGGATCAAGGATCAAATGTACGAAAGAAGTCGCAGAGTCTTGTGCTGCTAGTGAATGATTCTGAAAGAATCAGTGAGATTAGGCAGAAGGCTAATACTAACAGGGACAAGTTTCGAAGTGCATCATTAGCTGGTGGAGCATATAGGCCAAACTCCAATGCTGGGGGGTATGGAGACCGTTATGATGATGATTATAATGAGGGACGCTATAGAAGCAGGGACGAAGATAGGAATAGCAATGGTTATGGAAGGGAAAGAGAATATGACTATAGAGCTGATGACCGCGGGAGGAATTCTGACTCAAATATACGTGATAGAGATCAATATAGGAGAGATGGTGAAGAACGCTATGGAAAAGATAGTCCCAGGGATGGTGATAGTTGGGGACGAAGAAGTGTTGATGATCACCGATATGGTTCAAGAAGGGATCAAGATAATGATCACGATGACAATGCACGTGATGGTAGTGGAAGAGGTGATGACAGGTCTCCAGACGTGAGGCGGCATGATCATAAATTTTCAGAGCAAGACACTGGTGCACCTCCTAGTTATGAAGAGGCAGTGAACGAGTCTCAAAGCCCACCAGCTCATAATGATAGGGACCAAGAAACCTCAAAGTCTGCTCCTGCTACTTCATCTTCGCCTGTTACCAGTGCAACTAGCCAGTCAAGTCCCGTTCCTGGTACTCCAACATCTGGAAACCAGTTAATTGGGTCCTTTGATGCATTTGATCCTCGCAGTTCAGTCACAGCTGCTCCAACTGTTCCACCAAACAATACTGAGATGGACTTACTTGGCTCACTGACGGATTTTCCTTCAAACCCATTGGCCATTATGCCAGTGGCATCTGCAAACGTGACTGGAGCCTTCGAGCCTGATTCCCACATGAACTCTGGTGCAGGAACCTCGCACGCTATTATGTCAGTAGCTAGTGTCAGTAATCAGAGTTTTGAAGATCCTTTTGGCGACACTCCTTTTAAAGCTATGCTTTCTGATGATGGTGCCCCTCAATTCCATTCTTCTGCTATGACAGATTCTCTCCAGTCTTCCCTGCATCAAAGCCTTGGTCAACCCCAACCTTCTTCCATGACAGATCCTCTCCAGTCTTCCCTACACCAAAACCTTGGACAATCTCATCCTTCTACTATGACAGATCCTTTCCAGTCTTCTCTGCACCAAGGCCTTGGACAATCCCAAGGAGCTACACCGGAAACAAACCAAGTCTCTACTTCTGAATTTAGTAATGGATTTTCTGCTTCAACTGGTGCATCTGGCTTATCCAGTTTGCAAGCACCATCAGACCCACAGTTTCTTCCAGGGCCATCCACTATTCCAGAACCCGAGATCGATATACTGGCAGATATTCTACCTCCTTCTGGACCTCCATCTAACACAGCATCCCTGCCAACTTATTCATTCCCCAGCGACCAGCCTGCGTTGCCTACTCCCTTCTCAGATCCTGCTCAACCTCACCAAACTTTTACAGCTTTAAGCAATCAGCCTTCAAAACCAAATGATTGCTCCGTCCTTAATTTGCAACCCCAACCAGGAACTACGGCACCTTTGTACTCAAATATGGCTTTCCCGCCTCAAAGTGCACCTACTGGACAGCTTGGATATGGTGCCCCACAGGGAGGATCTACAGCACCTGCTGGTCAGTTAGGCTATGGGCCCCCACAGGGAGGATCTGCAGCACCTACTGGACAGTTTGGCTATGGGATGGCCCCACAGGGAGGATCTACAGCACCCACTGGACAGCATGGCTATGGGGTTCCACAGGGGGGATCTACGGCACCCAGTGGACAGCATGGCTATGGGGCTCCACAGGGGGGATCTACGGCACCCAGTGGACAGCATGGCTATGGGGCTCCACAGGGGGGATCTATGGCACCCACTGGACAGCACGGCTATGGGGCTCCACAGGGGGGATCTATGGCACCCACTGGACAGCATGGCTATGGGGGTCCACAGGGGGGATCTATGACACCCACTGGACAGCATGGCTATGGGGGTCCACAGGGGGGATCTACGGCACCTACTGGACAGCATGGCTATGGGGGTCCACAGGGGGGATCTACGGCACCTACTGGACAGCATGGCTATGGGGGTCCACAGGGAGGATCTACATCTCCTTTCTATCCACAGATGGCTTCAACAAGCAGTTCAAATCCGCAGGCTAATGGTGGTGGAGGCTATTTTATAGAGAATATAGGGTCTGCTGCTTCTGTTACGACACAAATTGCTCAGCAAAATCCAAGTGGGCCAGCTGCTCCACTTGGCAGTGGAAACATGCAGCATCATGGCGTTACATCCCAGCCATTAGCTTCACATGGAGCTTATCAGGTACAAAATGGACATGCTGCACAGCCAAGGAGTGATGATTTTCTGGGCAGCATTCTTCCGCAAGCTGCGCCCCCTCAAGTTCCGTTACAACAAGGTTTTCCAACCTTAACAGATTCACTTTCAATAGCATCTCAACCGTCTAAGGGCAAGTTTGAGACAAAGTCAACAGTCTGGACCGACACTCTTAACAGAGGGCTAGTTGATTTGAACATATCTGGCCCTAAAACAAATCCACTGGCAGACATTGGAGTGGATTTTGATTCCATAAATCGGAAAGAGAAGAGGATGGAAAAACCTACTACAACTGCAGTGACTTCTACTATCACCATGGGTAAAGCTATGGGATCTGGTTCTGGAATGGGCCGTGCCGGTGCGGGTGCCCTCAGAGCTCCATCGAACCCAATGGTGAGTTCAGGTATGGGTATGAACAATGTTGGCATGGGAGGGCCCTACGGAGGAATCAATCAACCCATGGGAATGGGAATGGGTATGGGTATGGGTATGAACAATGCTGGTATGAATCCGGGAATGGGGATGAGCATGAACCCTGGGATGGGAATGAACCAGGGCATGAACCCTGGGATGGGAATGGGAATGAACCCGGGTATGAACCCTGGGATGGGAATGAACCCTGGGATGGGAATGAACCCAGGTATGGGAATGAACCCTGGCATGGGAATGAATATGGGTATGGGACAAGGAATGCAATTCCGACCACCAGGTGGATTTCAGCTGGGATCGAATGCTTCGGGTAGTTATAATCCAATGATGAGTGGGTACGCCCCCCAACAATCATATGGTGATTGGGATGGCCAACTTGATGTGTTGCCATTGGAAGTTCTTCTTCACATTGGACATTTGGTGAAGAGCAAAAATGCTGCCATTTCATTCATTTCTATGAAATCTGCTGGATGCGATGTTCATTTGTTTGATATTCTTTGTATGCTTTAA 3660 48.52 MKKVFGQTVRDIKREVNKTVLKVPRLEQKVLDATSNEPWGPHGTLLAEIAQASKNYHECQMIMAVIWKRVNDSGKNWRHVYKGLTVLEYLVAHGSERVIDEIKDHAYQLSGLSSFQYIDSSGRDQGSNVRKKSQSLVLLVNDSERISEIRQKANTNRDKFRSASLAGGAYRPNSNAGGYGDRYDDDYNEGRYRSRDEDRNSNGYGREREYDYRADDRGRNSDSNIRDRDQYRRDGEERYGKDSPRDGDSWGRRSVDDHRYGSRRDQDNDHDDNARDGSGRGDDRSPDVRRHDHKFSEQDTGAPPSYEEAVNESQSPPAHNDRDQETSKSAPATSSSPVTSATSQSSPVPGTPTSGNQLIGSFDAFDPRSSVTAAPTVPPNNTEMDLLGSLTDFPSNPLAIMPVASANVTGAFEPDSHMNSGAGTSHAIMSVASVSNQSFEDPFGDTPFKAMLSDDGAPQFHSSAMTDSLQSSLHQSLGQPQPSSMTDPLQSSLHQNLGQSHPSTMTDPFQSSLHQGLGQSQGATPETNQVSTSEFSNGFSASTGASGLSSLQAPSDPQFLPGPSTIPEPEIDILADILPPSGPPSNTASLPTYSFPSDQPALPTPFSDPAQPHQTFTALSNQPSKPNDCSVLNLQPQPGTTAPLYSNMAFPPQSAPTGQLGYGAPQGGSTAPAGQLGYGPPQGGSAAPTGQFGYGMAPQGGSTAPTGQHGYGVPQGGSTAPSGQHGYGAPQGGSTAPSGQHGYGAPQGGSMAPTGQHGYGAPQGGSMAPTGQHGYGGPQGGSMTPTGQHGYGGPQGGSTAPTGQHGYGGPQGGSTAPTGQHGYGGPQGGSTSPFYPQMASTSSSNPQANGGGGYFIENIGSAASVTTQIAQQNPSGPAAPLGSGNMQHHGVTSQPLASHGAYQVQNGHAAQPRSDDFLGSILPQAAPPQVPLQQGFPTLTDSLSIASQPSKGKFETKSTVWTDTLNRGLVDLNISGPKTNPLADIGVDFDSINRKEKRMEKPTTTAVTSTITMGKAMGSGSGMGRAGAGALRAPSNPMVSSGMGMNNVGMGGPYGGINQPMGMGMGMGMGMNNAGMNPGMGMSMNPGMGMNQGMNPGMGMGMNPGMNPGMGMNPGMGMNPGMGMNPGMGMNMGMGQGMQFRPPGGFQLGSNASGSYNPMMSGYAPQQSYGDWDGQLDVLPLEVLLHIGHLVKSKNAAISFISMKSAGCDVHLFDILCML 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 470540 478747 - CmoCh08G000910.1 Cmo08g00091 386824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 608 664 - -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 868 928 - -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 459 559 - -
Cmo08g00091 1219 PANTHER EPSIN/ENT-RELATED 1 1068 - -
Cmo08g00091 1219 SMART enth_2 24 150 IPR013809 -
Cmo08g00091 1219 CDD ENTH 26 142 - -
Cmo08g00091 1219 Gene3D - 23 163 IPR008942 -
Cmo08g00091 1219 PANTHER CLATHRIN INTERACTOR EPSIN 2-RELATED 1 1068 - -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 777 851 - -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 150 382 - -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 447 853 - -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 327 360 - -
Cmo08g00091 1219 SUPERFAMILY ENTH/VHS domain 6 149 IPR008942 -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 868 910 - -
Cmo08g00091 1219 Pfam ENTH domain 26 145 IPR013809 -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 182 298 - -
Cmo08g00091 1219 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 587 601 - -
Cmo08g00091 1219 MobiDBLite consensus disorder prediction 701 741 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00091 K12471 EPN; epsin - csv:101209356 1423.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01632 Cmo08g00091 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01103 Cmo-Chr5:8792161 Cmo08g00091 Cmo-Chr8:470540 9.59E-08 dispersed
Cmo06g01632 Cmo-Chr6:11381172 Cmo08g00091 Cmo-Chr8:470540 1.43E-44 dispersed
Cmo08g00091 Cmo-Chr8:470540 Cmo14g01533 Cmo-Chr14:12247970 1.03E-36 dispersed
Cmo04g00223 Cmo-Chr4:1116374 Cmo08g00091 Cmo-Chr8:470540 4.63E-09 transposed
Cmo17g00567 Cmo-Chr17:5827162 Cmo08g00091 Cmo-Chr8:470540 6.25E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007301 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 9 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00091 Cmo_Chr08 FPKM 2.477912 4.506211 2.673694 4.558785 0.0 0.0 0.766063 1.507262 1.119105 1.95618