Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00093 ATGCAAATAGCTTGTCAACCCCATCCACTAGTTTACTTCTCAATCAGAAGCAGCTCTAAAAGAAAGAATGGATGGAAGAATATACAAAACTTGCATTCAAGCAACTTTGTTAAACTTGTATTTGTGGAACCTCAGACTCGTAAATTTGCTATGCCTTTGTGCAAAAACAGATTGAATGCTATCCCAAATGCAGAAGATGGGCACCCTTCTGCCTCAATGTCAGAAGACATCAATTCAAATCCGGTGCTTAATTCTATAGAAGGAGAGTTGTGGAGTAAATGGTGGCCACCAAAGTATCTATGGAGAGGGCTATCAGTTCTTTTTCTGGCTGGGCAGGTCATTATGAGGACTTTAAAGGGTAAAGTCCATTGGAAAAATACTCTTCAACAGCTAGAGAGAGTAGGACCAAGATCTGTAGGGGTTTGCCTTCTAACATCTGCGTTTGTTGGCATGGCCTTTACTATCCAATTTGTTAGAGAATTTACTAGATTAGGATTGAACAGATCTGTTGGTGGTGTATTAGCACTGGCATTCTCAAGGGAGCTGAGTCCTGTGATCACGTCGATTGTGGTTGCAGGACGAATCGGTAGTTCGTATGCTGCAGAATTAGGAACAATGCAAGTCTCTGAGCAAACAGACACACTAAGAGTCTTGGGATCGAACCCTGTCGATTATCTCGTCACACCAAGAGTTATAGCATCCTGCATTGCTCTTCCAATTCTAACTCTAATGTGTTTCACAGTTGGGATGGCATCAAGTGCCCTTTTGGCTGACAGCGTTTATGGTGTTAGCATCAACATTATCTTTGATTCAGCTCTGAGAGCTCTAAAGTCATGGGATATTATCAGCTCGATGATCAAATCGCAGGTTTTCGGAGCTATCATATCGATTGTAAGCTGTGGCTGGGGTATTACGACTTCCGGGGGCGCTAAGGGAGTCGGGGAGTCCACAACTTCGGCCGTAGTCATCTCTCTTGTAGGCATATTTATTGCTGATTTCACCCTTTCTTGTTTCTTCTTCCAGGGAGCTGGAGATTCCGTGAAGAACTCAAACAAATCCAATGCATCATGTGACATTAAGTATGCCACACCAAAATTGTGA 1101 42.87 MQIACQPHPLVYFSIRSSSKRKNGWKNIQNLHSSNFVKLVFVEPQTRKFAMPLCKNRLNAIPNAEDGHPSASMSEDINSNPVLNSIEGELWSKWWPPKYLWRGLSVLFLAGQVIMRTLKGKVHWKNTLQQLERVGPRSVGVCLLTSAFVGMAFTIQFVREFTRLGLNRSVGGVLALAFSRELSPVITSIVVAGRIGSSYAAELGTMQVSEQTDTLRVLGSNPVDYLVTPRVIASCIALPILTLMCFTVGMASSALLADSVYGVSINIIFDSALRALKSWDIISSMIKSQVFGAIISIVSCGWGITTSGGAKGVGESTTSAVVISLVGIFIADFTLSCFFFQGAGDSVKNSNKSNASCDIKYATPKL 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 483250 485406 + CmoCh08G000930.1 Cmo08g00093 386826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00093 366 TIGRFAM TIGR00056: ABC transport permease subunit 104 342 IPR003453 -
Cmo08g00093 366 PANTHER ABC TRANSPORTER PERMEASE PROTEIN-RELATED 1 350 IPR030802 GO:0043190
Cmo08g00093 366 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 1, CHLOROPLASTIC 1 350 - -
Cmo08g00093 366 Pfam Permease MlaE 128 336 IPR030802 GO:0043190
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00093 - - - csv:101206602 644.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g00561 Cmo-Chr17:5760826 Cmo08g00093 Cmo-Chr8:483250 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1073 . . Bda03g01079 . Bpe04g00996 . Bma04g00993 . Cmo08g00093 . . . . . . . . . . . . . . . . . . . . . . . . Cone18ag0896 Cone11ag0608 . . . . . . . . . . . . . . . . . Car08g00074 . . Cpe17g00999 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004667 1 3 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00093 Cmo_Chr08 FPKM 28.004623 33.695789 48.742435 46.937698 58.960831 61.174522 51.554398 39.47961 41.061188 39.023148