Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00094 ATGATTTCGACGGAGAAGCCGGTTGAGGCTCGCGCTTTGGAGTGTTTAGGGCGAGGGTTTGATCTGACGAATGATTTTAGGTTAAAATTTGTGAAGGGGAGTGGCGCCGGAGGGCGGAGGTTGGTGGTGATCGACGATGTAAATAAAAGAGATATTGTTTTTCCCGATGGAGGTGTTGTTCAGGGAGTTTCTCAGGACATTCGTTGCGATAAAGGAGATCGAATTCGCTTCAAATCCGATGTTCTTCAGTTCAATCAGATGTCTGAGTTACTGAATCAGAGATCCTCCATTCAAGGAAAAGTTCCTTCGGGCTATTTTAATTCTATGTTTAATTTGAGTGGAGACTGGTTTCATGATGCTGCTGATGCCAATTATCTTGCTTTTGATGGTTATTTTATCGCACTATACTATTTGCATTTAACGGCATCTCCACTTGTATTACAAGACGAAGTGAAGAAAGCTGTTCCATCCCATTGGGACCCAGCATCGTTGTCCAGGTTCATACAGACATATGGAACGCATATAATAGTAGGAACCGCCATTGGAGGTCAAGACTTAATTTCGGTACGGCAGAGACCTTCTTCGTCTATACCTCCTGCTGAACTTCGGAGACACTTGGAGGATCTTGGAGATATTCTGTTCTCAGATAAAAGAAGTCCTTCTTCTCTGCATAGAAAAAGAGACGTGAAGGTTCCAGAAATATTTACAAAAATTTTGCAGTCAAGTTCGATACAGTTGGCCAATATTTCAGAAACATCAAGCAAGGATGGAATCACCTTAATTTGTTCTAAACGAGGAGGGGATCCTTTCCTTCACAGTCATACCAGCTGGCTTCAGACTGTTAGCTTTAAACCAGAAGTTATTTTATTCAAATTTGTACCTATTACTTCTCTTCTTACTGGGGTTGCAGGCAGTGGTTATCTCAGCCATGCGATAAACTTGTACTTGCGCTATAAACCTTCTTTGAACGACTTGCAATACTTCTTGGAGTTCCAAATTCCGACACAATGGGCACCAAACTTCTGTGAGTTGCCTCTTGGGCATCAGAGGAGAAAGGCCACCTGCCCTACCCTGCAGTTCACTTTTATGAGCCCTAGGACGTACATCACCTCCACCCAGGTCACAAGTAGTAGGAAACCATTAGTTGGTCTTCGCCTCTATTTAGAAGGGAAAAAGTCCAACTGGTTGGCTCTACATGTACAACATCTAACCAGCCTTCCAAAAGTCATGGCTAGATTGATTGGCACATCTGATCAATCAAGACGAAGCCAGTGGGTAGGCACCGACGACAGCGACTCCAATGGTCGATTCCTCGAACCTGTCAAATGGAAAAGATATTCAAATGTGTGCACTTCAGTTGTCAGGCACGATCCCAACTGGTTGAAGCAAGATGGAAATGGTGTTTACATTGTAACAGGAGCTCAGCTTATCAGCAAGGGGAAGTGGCCCAAGACAATACTTCACCTACGCCTGCAGTTCACTCACTTGCCCAATTGTACCATTCGAAGAACCGAATGGGCTGCTGCCCCTGAAGGTTCTCGCAAGTCGACTTTCCTCACCAATCTAAGCACAACATTTACGTTCACACAGAGAGCTGCTGCTGATAAAAAGAAGCAGGTCCCAGGTGCTCTGAACTCTGGTGTCTATGGAGAGGCGCCACCAGTCCCGGTTCGATCCAAAAAGCTTCTTAAATACGTCGATACGTCTGAGGTGGTAAAGGGCCCACATGATACTCCAGGACATTGGCTGGTAACGGCTGCTAAGTTGGTAACTGAGGGTGGTAAGATTGGTTTGAATGTAAAGTTTGCATTGTTAGATTATTGTTGA 1827 44.55 MISTEKPVEARALECLGRGFDLTNDFRLKFVKGSGAGGRRLVVIDDVNKRDIVFPDGGVVQGVSQDIRCDKGDRIRFKSDVLQFNQMSELLNQRSSIQGKVPSGYFNSMFNLSGDWFHDAADANYLAFDGYFIALYYLHLTASPLVLQDEVKKAVPSHWDPASLSRFIQTYGTHIIVGTAIGGQDLISVRQRPSSSIPPAELRRHLEDLGDILFSDKRSPSSLHRKRDVKVPEIFTKILQSSSIQLANISETSSKDGITLICSKRGGDPFLHSHTSWLQTVSFKPEVILFKFVPITSLLTGVAGSGYLSHAINLYLRYKPSLNDLQYFLEFQIPTQWAPNFCELPLGHQRRKATCPTLQFTFMSPRTYITSTQVTSSRKPLVGLRLYLEGKKSNWLALHVQHLTSLPKVMARLIGTSDQSRRSQWVGTDDSDSNGRFLEPVKWKRYSNVCTSVVRHDPNWLKQDGNGVYIVTGAQLISKGKWPKTILHLRLQFTHLPNCTIRRTEWAAAPEGSRKSTFLTNLSTTFTFTQRAAADKKKQVPGALNSGVYGEAPPVPVRSKKLLKYVDTSEVVKGPHDTPGHWLVTAAKLVTEGGKIGLNVKFALLDYC 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 485302 490344 - CmoCh08G000940.1 Cmo08g00094 386827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00094 608 PANTHER OS02G0475300 PROTEIN 4 607 - -
Cmo08g00094 608 ProSiteProfiles Membrane attack complex/perforin (MACPF) domain profile. 1 329 IPR020864 -
Cmo08g00094 608 PANTHER MACPF DOMAIN-CONTAINING PROTEIN CAD1 4 607 IPR044663 GO:0006952|GO:0012501|GO:2000031
Cmo08g00094 608 SMART MACPF_8 123 317 IPR020864 -
Cmo08g00094 608 Pfam MAC/Perforin domain 106 315 IPR020864 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00094 - - - cmax:111498109 1213.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00094 Cmo-Chr8:485302 Cmo18g00368 Cmo-Chr18:2403971 1.90E-172 dispersed
Cmo08g00094 Cmo-Chr8:485302 Cmo04g02227 Cmo-Chr4:16639377 9.26E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1062 . . . . Bpe04g00997 . . . Cmo08g00094 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car08g00075 . . Cpe17g01000 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009745 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00094 Cmo_Chr08 FPKM 0.780028 0.0 3.107451 1.916023 0.72379 0.0 0.0 36.440258 37.46841 32.642193