Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00116 ATGGAGTTGGATGGCCTCGAACGCGCGCCGCCGTCCATGGACGTGATGAACGAGGAGGACAAGACCCTTCAATGTCACTGTCAGTTTCCGTCGATTTCCAAGCCTCGGATCAGCAATAACGACAATCCGACCACTACAAGTGTCCACGAGCTGCTGGAATGTCCTGTCTGCACTAATTCTATGTATCCTCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCTTCGTGTAAAACGAAGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATTAGATGTCTAGCATTAGAAAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCTCGGAGATATTGCCGTACTATAGTAAACTAAAACATGAATCTGCCTGTTACTTCAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGGGAGATTCCTTTCCTTGTTTCTCATCTTCGAGATGATCACAAAGTCGATATGCATTCTGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTATATGGATGTTAACTGTCTTCCACTGTTTTGACCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTTGGTATGGCACCAGTTTACATGGTGTTTCTCCGATTCATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGCCGGTGGGAATGGGAGGAAGCTAACGTGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCCGAGACAGCCACGATGGCCTCATTATACATCGAAACATGGCACTGTTCTTCTCGGGCGGGGAAAGGAAAGAGCTGAAGTTGCGGATCATGGGACGGATTTGGAAAGAACAAAATAAGCAGTGA 918 47.28 MELDGLERAPPSMDVMNEEDKTLQCHCQFPSISKPRISNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTKVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCSEILPYYSKLKHESACYFRPYTCPYAGSDCPIDGEIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENAIWMLTVFHCFDQYFCLHFEAFQLGMAPVYMVFLRFMGDETDARNYSYSLEAGGNGRKLTWEGNPRSIRDNHKKVRDSHDGLIIHRNMALFFSGGERKELKLRIMGRIWKEQNKQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 602767 605274 + CmoCh08G001160.1 Cmo08g00116 386849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00116 305 CDD RING-HC_SIAHs 52 90 - -
Cmo08g00116 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 12 303 - -
Cmo08g00116 305 SUPERFAMILY TRAF domain-like 107 298 - -
Cmo08g00116 305 SUPERFAMILY RING/U-box 48 94 - -
Cmo08g00116 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 295 IPR008974 GO:0005515
Cmo08g00116 305 PANTHER UBIQUITIN LIGASE SINAT3 12 303 - -
Cmo08g00116 305 Pfam Seven in absentia protein family 96 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Cmo08g00116 305 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
Cmo08g00116 305 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Cmo08g00116 305 CDD Sina 168 296 - -
Cmo08g00116 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 97 IPR013083 -
Cmo08g00116 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 162 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02404 Cmo-Chr4:17906023 Cmo08g00116 Cmo-Chr8:602767 9.90E-23 dispersed
Cmo08g00116 Cmo-Chr8:602767 Cmo18g01361 Cmo-Chr18:12800605 2.42E-169 dispersed
Cmo17g00539 Cmo-Chr17:5342452 Cmo08g00116 Cmo-Chr8:602767 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00116 K04506 - csv:101209363 613.224