Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00122 ATGACGCTTTCAGAGCAGAATCCGGCGGAGTTTTGCAAAGAAACCAAGGAATTTTGTAAATTCCGACCAGTTTTTGGAGTGTTTGATTGTTTTTGCTTGGTGGGTTTGGAAGGTGAGGGTCTGTTTGAGGAGCTATGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTTTCAATGGAGAGAGGGTTTTTTACTTCCCTCAAGGGCATATGGAACAACTGGAAGAGTCAACAAATCATGAACTCAATCACCAAATCCCTCATTTTGATCTTCCTTCTAAGATCCTCTGTCGTGTCGTGAACATTCGTTTGTTGGCTGAAAAGGAAACGGATGAGGTCTATGCTCAAATCACTTTACAACCAGAAGCTGATCAAAGTGAGCCGCAATGCCCTGATCCAGAGCCGCCTGAGCGGACAAGGCCAACTGTTCATTCTTTTTGTAAGATTTTGACAGCTTCTGATACTAGCACTCATGGAGGTTTCTCTGTTCTTAAAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAGTCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGACATGAGTGGAAATTTAAGCATATTTTCAGAGGTACACTTCAGCTGATCATGATGACCAAAGCTGTCTGTCAACCACGGAGGCATTTGCTAACGACAGGGTGGAGTACGTTCGTTGTATCGAAACGACTCGTTGCTGGGGATGCCTTTGTGTTCTTAAGGGGTGACAATGGGGAACTAAGAGTCGGGGTTCGACGACAGGCTCGACAGAAGAGTGTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTGTTCGTACGCAGACGTTTTTCGTCGTGTATTACAAGCCGAGAACTAGCCAATTCATCATCGGCTTAAACAAATACTTGGAAACGATAAAGAACAGATATGAAGTCGGGATGCGTTTTAAGATGAGATTTGAAGGAGAGGAATCACCGGAGAGAAGGTTCACTGGTACTATTGTTGGTGTTGGAGACATATCCCCAGTTTGGTCTGATTCTAAATGGCGATCACTGAAGGTGAACATTATTCAATGGGATGAAGCTGCTGCAATCCAGAGGCCCGAGCGAGTTTCTCCGTGGGAAATCGAACCGTTTGTACCGTCTGCGTCCTTAAACTTCACTCATCCATCCATAAAGAGTAAGAGGGCTCGACCCGTCGAGGTTCCTCCTCCTGGTAAGCGGGAAAACGAGTTGCTTTTTCGTTCGAAAAGGCTAGCTTCTTCCTTGTCATTATGTTTGATTCCAATGTATGTTGATTGTGGGGTTGTAGAGAACACTTCTAGCTCGACTCCTACGGGTTTTTGGCTTCACGGATCGACGATTCCTCACGAGATACCCCAACTAAGTGGTGCTAATGATGTTCCGAGCAGCGGTAACCAGGTTGTTTGGTCTCTCTGGCAGCAAACGCTCGATGTCAATGTCGATAGCAGTCGAAGCCACTGCAATCCAATGGCACATGTTGAAGGCATTTGGCCTTCTCCTCCTCCTCCAGTCTGTAATAACTCCCTGAAGCCTCTTCCCTCCCCTTATTCTCCATCTAGTACTTCAAAGCCTAGCAGTGAGCTCATTGAGCATGATCAATCGGAGAAAGGGAATAAACCCGACATCTCTCTCGGCTGCCGAATATTCGGGATCGATTTGAAAAAGAACTCTAGCATTGTCCCTTCCTTGGAGAAGAAATCGTGTTGCCAAACTACGGTGGCCACCGACATTGCCAAGGATCCAGTACCGATAGCTGCTGTGACATCTCAAGCCGATGCAGGAAAGGAGCAGCAGCAAGTTGCATCAGAGCTGTCGATGAAAGGAACACAGACGAATCACATTCCGAATTCATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTTGGTCGAGCAGTTGACTTAACGACACTGAAAGGGTACGAAGATCTCATAGACGAACTCGAGAACGTGTTTGAAATAAAAGGAGAACTTCGCGAAATGAACAAGTGGTCTATCGTTTTCACCGACGATGAATACGACATGATGCTCGTGGGGGATGATCCATGGCCAGAATTCTGCAAGATGGTGAAGAGGATCTTTATATACTCGAGCGAAGAAGTTAAGACGATGAGTAGCAGCAGCAAGCTCGTTTCGCCACCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACAGAATCCTAA 2247 46.46 MTLSEQNPAEFCKETKEFCKFRPVFGVFDCFCLVGLEGEGLFEELWKACAGPLVEVPFNGERVFYFPQGHMEQLEESTNHELNHQIPHFDLPSKILCRVVNIRLLAEKETDEVYAQITLQPEADQSEPQCPDPEPPERTRPTVHSFCKILTASDTSTHGGFSVLKKHATECLPPLDMSQSTPTQELAAKDLHGHEWKFKHIFRGTLQLIMMTKAVCQPRRHLLTTGWSTFVVSKRLVAGDAFVFLRGDNGELRVGVRRQARQKSVMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIIGLNKYLETIKNRYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPVWSDSKWRSLKVNIIQWDEAAAIQRPERVSPWEIEPFVPSASLNFTHPSIKSKRARPVEVPPPGKRENELLFRSKRLASSLSLCLIPMYVDCGVVENTSSSTPTGFWLHGSTIPHEIPQLSGANDVPSSGNQVVWSLWQQTLDVNVDSSRSHCNPMAHVEGIWPSPPPPVCNNSLKPLPSPYSPSSTSKPSSELIEHDQSEKGNKPDISLGCRIFGIDLKKNSSIVPSLEKKSCCQTTVATDIAKDPVPIAAVTSQADAGKEQQQVASELSMKGTQTNHIPNSSSRTRTKVQMQGVAVGRAVDLTTLKGYEDLIDELENVFEIKGELREMNKWSIVFTDDEYDMMLVGDDPWPEFCKMVKRIFIYSSEEVKTMSSSSKLVSPPSLDSLDSERKTES 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 629552 633268 + CmoCh08G001220.1 Cmo08g00122 386855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00122 748 MobiDBLite consensus disorder prediction 526 559 - -
Cmo08g00122 748 MobiDBLite consensus disorder prediction 528 545 - -
Cmo08g00122 748 SUPERFAMILY CAD & PB1 domains 634 714 - -
Cmo08g00122 748 PANTHER AUXIN RESPONSE FACTOR 11 33 414 - -
Cmo08g00122 748 MobiDBLite consensus disorder prediction 622 642 - -
Cmo08g00122 748 MobiDBLite consensus disorder prediction 724 748 - -
Cmo08g00122 748 Pfam Auxin response factor 284 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo08g00122 748 SMART B3_2 146 260 IPR003340 GO:0003677
Cmo08g00122 748 Pfam B3 DNA binding domain 146 259 IPR003340 GO:0003677
Cmo08g00122 748 ProSiteProfiles PB1 domain profile. 638 719 IPR000270 GO:0005515
Cmo08g00122 748 ProSiteProfiles B3 DNA-binding domain profile. 146 260 IPR003340 GO:0003677
Cmo08g00122 748 CDD B3_DNA 144 258 IPR003340 GO:0003677
Cmo08g00122 748 PANTHER AUXIN RESPONSE FACTOR 11 444 736 - -
Cmo08g00122 748 Gene3D - 319 394 - -
Cmo08g00122 748 Pfam AUX/IAA family 625 723 IPR033389 -
Cmo08g00122 748 Gene3D - 143 260 IPR015300 -
Cmo08g00122 748 SUPERFAMILY DNA-binding pseudobarrel domain 137 287 IPR015300 -
Cmo08g00122 748 MobiDBLite consensus disorder prediction 119 141 - -
Cmo08g00122 748 Gene3D - 634 726 - -
Cmo08g00122 748 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 414 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo08g00122 748 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 444 736 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00122 Cmo-Chr8:629552 Cmo16g00585 Cmo-Chr16:2822610 0 dispersed
Cmo08g00122 Cmo-Chr8:629552 Cmo04g00721 Cmo-Chr4:3582996 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10203 PF02309 AUX_IAA 3.50E-10 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00122 K14486 - csv:101205805 1040.02