Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00122 | ATGACGCTTTCAGAGCAGAATCCGGCGGAGTTTTGCAAAGAAACCAAGGAATTTTGTAAATTCCGACCAGTTTTTGGAGTGTTTGATTGTTTTTGCTTGGTGGGTTTGGAAGGTGAGGGTCTGTTTGAGGAGCTATGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTTTCAATGGAGAGAGGGTTTTTTACTTCCCTCAAGGGCATATGGAACAACTGGAAGAGTCAACAAATCATGAACTCAATCACCAAATCCCTCATTTTGATCTTCCTTCTAAGATCCTCTGTCGTGTCGTGAACATTCGTTTGTTGGCTGAAAAGGAAACGGATGAGGTCTATGCTCAAATCACTTTACAACCAGAAGCTGATCAAAGTGAGCCGCAATGCCCTGATCCAGAGCCGCCTGAGCGGACAAGGCCAACTGTTCATTCTTTTTGTAAGATTTTGACAGCTTCTGATACTAGCACTCATGGAGGTTTCTCTGTTCTTAAAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAGTCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGACATGAGTGGAAATTTAAGCATATTTTCAGAGGTACACTTCAGCTGATCATGATGACCAAAGCTGTCTGTCAACCACGGAGGCATTTGCTAACGACAGGGTGGAGTACGTTCGTTGTATCGAAACGACTCGTTGCTGGGGATGCCTTTGTGTTCTTAAGGGGTGACAATGGGGAACTAAGAGTCGGGGTTCGACGACAGGCTCGACAGAAGAGTGTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTGTTCGTACGCAGACGTTTTTCGTCGTGTATTACAAGCCGAGAACTAGCCAATTCATCATCGGCTTAAACAAATACTTGGAAACGATAAAGAACAGATATGAAGTCGGGATGCGTTTTAAGATGAGATTTGAAGGAGAGGAATCACCGGAGAGAAGGTTCACTGGTACTATTGTTGGTGTTGGAGACATATCCCCAGTTTGGTCTGATTCTAAATGGCGATCACTGAAGGTGAACATTATTCAATGGGATGAAGCTGCTGCAATCCAGAGGCCCGAGCGAGTTTCTCCGTGGGAAATCGAACCGTTTGTACCGTCTGCGTCCTTAAACTTCACTCATCCATCCATAAAGAGTAAGAGGGCTCGACCCGTCGAGGTTCCTCCTCCTGGTAAGCGGGAAAACGAGTTGCTTTTTCGTTCGAAAAGGCTAGCTTCTTCCTTGTCATTATGTTTGATTCCAATGTATGTTGATTGTGGGGTTGTAGAGAACACTTCTAGCTCGACTCCTACGGGTTTTTGGCTTCACGGATCGACGATTCCTCACGAGATACCCCAACTAAGTGGTGCTAATGATGTTCCGAGCAGCGGTAACCAGGTTGTTTGGTCTCTCTGGCAGCAAACGCTCGATGTCAATGTCGATAGCAGTCGAAGCCACTGCAATCCAATGGCACATGTTGAAGGCATTTGGCCTTCTCCTCCTCCTCCAGTCTGTAATAACTCCCTGAAGCCTCTTCCCTCCCCTTATTCTCCATCTAGTACTTCAAAGCCTAGCAGTGAGCTCATTGAGCATGATCAATCGGAGAAAGGGAATAAACCCGACATCTCTCTCGGCTGCCGAATATTCGGGATCGATTTGAAAAAGAACTCTAGCATTGTCCCTTCCTTGGAGAAGAAATCGTGTTGCCAAACTACGGTGGCCACCGACATTGCCAAGGATCCAGTACCGATAGCTGCTGTGACATCTCAAGCCGATGCAGGAAAGGAGCAGCAGCAAGTTGCATCAGAGCTGTCGATGAAAGGAACACAGACGAATCACATTCCGAATTCATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTTGGTCGAGCAGTTGACTTAACGACACTGAAAGGGTACGAAGATCTCATAGACGAACTCGAGAACGTGTTTGAAATAAAAGGAGAACTTCGCGAAATGAACAAGTGGTCTATCGTTTTCACCGACGATGAATACGACATGATGCTCGTGGGGGATGATCCATGGCCAGAATTCTGCAAGATGGTGAAGAGGATCTTTATATACTCGAGCGAAGAAGTTAAGACGATGAGTAGCAGCAGCAAGCTCGTTTCGCCACCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACAGAATCCTAA | 2247 | 46.46 | MTLSEQNPAEFCKETKEFCKFRPVFGVFDCFCLVGLEGEGLFEELWKACAGPLVEVPFNGERVFYFPQGHMEQLEESTNHELNHQIPHFDLPSKILCRVVNIRLLAEKETDEVYAQITLQPEADQSEPQCPDPEPPERTRPTVHSFCKILTASDTSTHGGFSVLKKHATECLPPLDMSQSTPTQELAAKDLHGHEWKFKHIFRGTLQLIMMTKAVCQPRRHLLTTGWSTFVVSKRLVAGDAFVFLRGDNGELRVGVRRQARQKSVMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIIGLNKYLETIKNRYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPVWSDSKWRSLKVNIIQWDEAAAIQRPERVSPWEIEPFVPSASLNFTHPSIKSKRARPVEVPPPGKRENELLFRSKRLASSLSLCLIPMYVDCGVVENTSSSTPTGFWLHGSTIPHEIPQLSGANDVPSSGNQVVWSLWQQTLDVNVDSSRSHCNPMAHVEGIWPSPPPPVCNNSLKPLPSPYSPSSTSKPSSELIEHDQSEKGNKPDISLGCRIFGIDLKKNSSIVPSLEKKSCCQTTVATDIAKDPVPIAAVTSQADAGKEQQQVASELSMKGTQTNHIPNSSSRTRTKVQMQGVAVGRAVDLTTLKGYEDLIDELENVFEIKGELREMNKWSIVFTDDEYDMMLVGDDPWPEFCKMVKRIFIYSSEEVKTMSSSSKLVSPPSLDSLDSERKTES | 748 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 629552 | 633268 | + | CmoCh08G001220.1 | Cmo08g00122 | 386855 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00122 | 748 | MobiDBLite | consensus disorder prediction | 526 | 559 | - | - | |
Cmo08g00122 | 748 | MobiDBLite | consensus disorder prediction | 528 | 545 | - | - | |
Cmo08g00122 | 748 | SUPERFAMILY | CAD & PB1 domains | 634 | 714 | - | - | |
Cmo08g00122 | 748 | PANTHER | AUXIN RESPONSE FACTOR 11 | 33 | 414 | - | - | |
Cmo08g00122 | 748 | MobiDBLite | consensus disorder prediction | 622 | 642 | - | - | |
Cmo08g00122 | 748 | MobiDBLite | consensus disorder prediction | 724 | 748 | - | - | |
Cmo08g00122 | 748 | Pfam | Auxin response factor | 284 | 363 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cmo08g00122 | 748 | SMART | B3_2 | 146 | 260 | IPR003340 | GO:0003677 | |
Cmo08g00122 | 748 | Pfam | B3 DNA binding domain | 146 | 259 | IPR003340 | GO:0003677 | |
Cmo08g00122 | 748 | ProSiteProfiles | PB1 domain profile. | 638 | 719 | IPR000270 | GO:0005515 | |
Cmo08g00122 | 748 | ProSiteProfiles | B3 DNA-binding domain profile. | 146 | 260 | IPR003340 | GO:0003677 | |
Cmo08g00122 | 748 | CDD | B3_DNA | 144 | 258 | IPR003340 | GO:0003677 | |
Cmo08g00122 | 748 | PANTHER | AUXIN RESPONSE FACTOR 11 | 444 | 736 | - | - | |
Cmo08g00122 | 748 | Gene3D | - | 319 | 394 | - | - | |
Cmo08g00122 | 748 | Pfam | AUX/IAA family | 625 | 723 | IPR033389 | - | |
Cmo08g00122 | 748 | Gene3D | - | 143 | 260 | IPR015300 | - | |
Cmo08g00122 | 748 | SUPERFAMILY | DNA-binding pseudobarrel domain | 137 | 287 | IPR015300 | - | |
Cmo08g00122 | 748 | MobiDBLite | consensus disorder prediction | 119 | 141 | - | - | |
Cmo08g00122 | 748 | Gene3D | - | 634 | 726 | - | - | |
Cmo08g00122 | 748 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 33 | 414 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo08g00122 | 748 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 444 | 736 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00122 | Cmo-Chr8:629552 | Cmo16g00585 | Cmo-Chr16:2822610 | 0 | dispersed | |
Cmo08g00122 | Cmo-Chr8:629552 | Cmo04g00721 | Cmo-Chr4:3582996 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10203 | PF02309 | AUX_IAA | 3.50E-10 | CL0072 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00122 | K14486 | - | csv:101205805 | 1040.02 |