Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00173 ATGTATTTGAGACTCAGGGGCATTGGTCATATGGGTGAAGGATCAATGGATGACATCGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCGTCGTCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTACTGGCAATGATTTGAGCTCATCTTGGATCGGAATGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACATTGCTGACAGAAGAAAAAGTATGTTTCCCGGGCTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTTGTCCATAGCGACGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA 924 47.51 MYLRLRGIGHMGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADRRKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 996835 999772 + CmoCh08G001730.1 Cmo08g00173 386906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00173 307 Gene3D - 45 114 IPR036893 GO:0003677|GO:0005634
Cmo08g00173 307 SUPERFAMILY SBT domain 51 132 IPR036893 GO:0003677|GO:0005634
Cmo08g00173 307 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 32 253 - -
Cmo08g00173 307 Pfam SBP domain 53 126 IPR004333 GO:0003677
Cmo08g00173 307 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Cmo08g00173 307 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 253 IPR044817 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00173 Cmo-Chr8:996835 Cmo13g00846 Cmo-Chr13:7802794 2.05E-51 dispersed
Cmo17g01376 Cmo-Chr17:10690874 Cmo08g00173 Cmo-Chr8:996835 2.54E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10210 PF03110 SBP 1.40E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00173 - - csv:101217032 475.322