Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00173 ATGTATTTGAGACTCAGGGGCATTGGTCATATGGGTGAAGGATCAATGGATGACATCGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCGTCGTCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTACTGGCAATGATTTGAGCTCATCTTGGATCGGAATGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACATTGCTGACAGAAGAAAAAGTATGTTTCCCGGGCTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTTGTCCATAGCGACGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA 924 47.51 MYLRLRGIGHMGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADRRKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 996835 999772 + CmoCh08G001730.1 Cmo08g00173 386906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00173 307 Gene3D - 45 114 IPR036893 GO:0003677|GO:0005634
Cmo08g00173 307 SUPERFAMILY SBT domain 51 132 IPR036893 GO:0003677|GO:0005634
Cmo08g00173 307 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 32 253 - -
Cmo08g00173 307 Pfam SBP domain 53 126 IPR004333 GO:0003677
Cmo08g00173 307 ProSiteProfiles Zinc finger SBP-type profile. 50 127 IPR004333 GO:0003677
Cmo08g00173 307 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 253 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00173 - - - csv:101217032 475.322
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00173 Cmo-Chr8:996835 Cmo13g00846 Cmo-Chr13:7802794 2.05E-51 dispersed
Cmo17g01376 Cmo-Chr17:10690874 Cmo08g00173 Cmo-Chr8:996835 2.54E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50670 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50670 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50670 64.1 4.4e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10210 PF03110 SBP 1.40E-28 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00173 Cmo_Chr08 FPKM 64.489372 68.960312 122.816284 126.634026 62.22459 45.801758 61.254604 131.454376 137.252106 140.344513