Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00175 ATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCGAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACTAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGACTCAGTACATGCTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAACGAAGCAAACAAGACACTGAAACAAAGGTTGATTGAAGGGTATCAAGTAAATGCGCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCTCCTAGCGATGCCTTCTTTCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTGACTGCTGGGCCGAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA 729 45.13 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQVNALQLNQSADDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1016886 1020763 + CmoCh08G001750.1 Cmo08g00175 386908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00175 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo08g00175 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo08g00175 242 Coils Coil 126 146 - -
Cmo08g00175 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cmo08g00175 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo08g00175 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cmo08g00175 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo08g00175 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Cmo08g00175 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo08g00175 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cmo08g00175 242 Coils Coil 152 172 - -
Cmo08g00175 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Cmo08g00175 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo08g00175 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo08g00175 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo08g00175 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00454 Cmo-Chr1:2174856 Cmo08g00175 Cmo-Chr8:1016886 1.76E-109 dispersed
Cmo08g00175 Cmo-Chr8:1016886 Cmo18g00020 Cmo-Chr18:82092 8.31E-79 dispersed
Cmo16g00165 Cmo-Chr16:750132 Cmo08g00175 Cmo-Chr8:1016886 1.22E-43 dispersed
Cmo20g00279 Cmo-Chr20:1353372 Cmo08g00175 Cmo-Chr8:1016886 2.08E-47 dispersed
Cmo08g00175 Cmo-Chr8:1016886 Cmo08g00176 Cmo-Chr8:1023858 9.60E-36 tandem
Cmo14g01181 Cmo-Chr14:9787590 Cmo08g00175 Cmo-Chr8:1016886 5.38E-91 transposed
Cmo17g01377 Cmo-Chr17:10695432 Cmo08g00175 Cmo-Chr8:1016886 1.37E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10211 PF01486 K-box 3.50E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00175 - - csv:101216798 480.33