Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00180 ATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGCTGGCTGAAGCCTCCAGAGGTGTTCTTTATTTTACAGAATTATGAAAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAAAAAAGGGATGGAAGAACTGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTGGTACACTATAGAGATATTAATGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGAAACCGTACTGTTGGGTCAAATGGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGACATTGATCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCGTGATAATAATTATACATCGTTTGAAATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGGTTCACGTAAGACAGTTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCGTCTTTGAGTAAAAGTACAACTGTGGACAATGAACATTACAACTTGGTGCACAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAGCTACCATATACCATTTCTTACAGAAGACCAAGGAAATTCTTTTGAAGTTGATACCAGTTTCATTGTTCCACAAGTGCAGAAATTTATAATCCGCCAAATTGTTCCTGAGCAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAGATGAATGTTTGCAGTCATTGCTACTCACATTCTAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTGTTACTTGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTATGTGTGGGCATTAAACCCAATTCTCAGTTGTGGTGTGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCGGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGCTCTGTTGAGGTAGAAGCAGAAATGACTGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACGTTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACAGCAGAAAGAGGCAGTTTTTGCTGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAACGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCGATTCGTCAAAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTCGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTATTTCGCAAAGAAAAAGTGGAAGTTACTATCGATGAGGCTGTTTCACGAGTGCGATCGATGGTTAACTCTCTGGATGCTCGTCAGCAATATCATCGTACGCTTAAAGGATTTCGAGAAGCTAAGGATCGACTTCTCTCGTCGACATTTCTGGGACTGAAGATTGTAATCAATATCCTAAGGATTTGA 2814 41.36 MNAGYDINDLYREAQTRWLKPPEVFFILQNYEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNGADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKDIDPFYGHEEGSNSNLIDYYEMSNDDQFSVLQHSENAIRDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALGSRKTVDLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSSYHIPFLTEDQGNSFEVDTSFIVPQVQKFIIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSHCYSHSSGATKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSVEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKVFRKEKVEVTIDEAVSRVRSMVNSLDARQQYHRTLKGFREAKDRLLSSTFLGLKIVINILRI 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1057956 1072099 + CmoCh08G001800.1 Cmo08g00180 386913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00180 937 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 1 917 - -
Cmo08g00180 937 SMART ANK_2a 613 645 IPR002110 GO:0005515
Cmo08g00180 937 Pfam Ankyrin repeats (3 copies) 589 672 IPR002110 GO:0005515
Cmo08g00180 937 SUPERFAMILY E set domains 391 473 IPR014756 -
Cmo08g00180 937 CDD IPT 396 474 - -
Cmo08g00180 937 ProSiteProfiles IQ motif profile. 731 759 IPR000048 GO:0005515
Cmo08g00180 937 MobiDBLite consensus disorder prediction 123 181 - -
Cmo08g00180 937 ProSiteProfiles Ankyrin repeat region circular profile. 613 639 - -
Cmo08g00180 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 839 IPR027417 -
Cmo08g00180 937 ProSiteProfiles IQ motif profile. 789 817 IPR000048 GO:0005515
Cmo08g00180 937 Pfam IQ calmodulin-binding motif 813 832 IPR000048 GO:0005515
Cmo08g00180 937 Pfam IQ calmodulin-binding motif 790 808 IPR000048 GO:0005515
Cmo08g00180 937 Pfam CG-1 domain 13 117 IPR005559 GO:0003677
Cmo08g00180 937 Gene3D Immunoglobulins 385 476 IPR013783 -
Cmo08g00180 937 ProSiteProfiles IQ motif profile. 811 835 IPR000048 GO:0005515
Cmo08g00180 937 Gene3D - 477 678 IPR036770 -
Cmo08g00180 937 Gene3D - 787 835 - -
Cmo08g00180 937 ProSiteProfiles Ankyrin repeat profile. 613 645 IPR002110 GO:0005515
Cmo08g00180 937 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 917 - -
Cmo08g00180 937 SMART CG_1_2 10 119 IPR005559 GO:0003677
Cmo08g00180 937 ProSiteProfiles CG-1 DNA-binding domain profile. 7 124 IPR005559 GO:0003677
Cmo08g00180 937 SMART iq_5 787 809 IPR000048 GO:0005515
Cmo08g00180 937 SMART iq_5 810 832 IPR000048 GO:0005515
Cmo08g00180 937 SMART iq_5 730 752 IPR000048 GO:0005515
Cmo08g00180 937 Pfam IPT/TIG domain 390 463 IPR002909 -
Cmo08g00180 937 SUPERFAMILY Ankyrin repeat 583 675 IPR036770 -
Cmo08g00180 937 MobiDBLite consensus disorder prediction 125 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00180 Cmo-Chr8:1057956 Cmo11g01484 Cmo-Chr11:10488400 4.18E-39 dispersed
Cmo17g01383 Cmo-Chr17:10724429 Cmo08g00180 Cmo-Chr8:1057956 3.30E-119 transposed
Cmo17g01384 Cmo-Chr17:10730213 Cmo08g00180 Cmo-Chr8:1057956 0 transposed
Cmo17g01382 Cmo-Chr17:10719368 Cmo08g00180 Cmo-Chr8:1057956 3.57E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10213 PF03859 CG-1 9.00E-38 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00180 K21596 - csv:101222798 1453.73