Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00180 ATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGCTGGCTGAAGCCTCCAGAGGTGTTCTTTATTTTACAGAATTATGAAAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAAAAAAGGGATGGAAGAACTGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTGGTACACTATAGAGATATTAATGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGAAACCGTACTGTTGGGTCAAATGGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGACATTGATCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCGTGATAATAATTATACATCGTTTGAAATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGGTTCACGTAAGACAGTTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCGTCTTTGAGTAAAAGTACAACTGTGGACAATGAACATTACAACTTGGTGCACAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAGCTACCATATACCATTTCTTACAGAAGACCAAGGAAATTCTTTTGAAGTTGATACCAGTTTCATTGTTCCACAAGTGCAGAAATTTATAATCCGCCAAATTGTTCCTGAGCAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAGATGAATGTTTGCAGTCATTGCTACTCACATTCTAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTGTTACTTGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTATGTGTGGGCATTAAACCCAATTCTCAGTTGTGGTGTGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCGGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGCTCTGTTGAGGTAGAAGCAGAAATGACTGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACGTTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACAGCAGAAAGAGGCAGTTTTTGCTGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAACGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCGATTCGTCAAAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTCGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTATTTCGCAAAGAAAAAGTGGAAGTTACTATCGATGAGGCTGTTTCACGAGTGCGATCGATGGTTAACTCTCTGGATGCTCGTCAGCAATATCATCGTACGCTTAAAGGATTTCGAGAAGCTAAGGATCGACTTCTCTCGTCGACATTTCTGGGACTGAAGATTGTAATCAATATCCTAAGGATTTGA 2814 41.36 MNAGYDINDLYREAQTRWLKPPEVFFILQNYEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNGADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKDIDPFYGHEEGSNSNLIDYYEMSNDDQFSVLQHSENAIRDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALGSRKTVDLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSSYHIPFLTEDQGNSFEVDTSFIVPQVQKFIIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSHCYSHSSGATKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSVEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKVFRKEKVEVTIDEAVSRVRSMVNSLDARQQYHRTLKGFREAKDRLLSSTFLGLKIVINILRI 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1057956 1072099 + CmoCh08G001800.1 Cmo08g00180 386913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00180 937 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 1 917 - -
Cmo08g00180 937 SMART ANK_2a 613 645 IPR002110 GO:0005515
Cmo08g00180 937 Pfam Ankyrin repeats (3 copies) 589 672 IPR002110 GO:0005515
Cmo08g00180 937 SUPERFAMILY E set domains 391 473 IPR014756 -
Cmo08g00180 937 CDD IPT 396 474 - -
Cmo08g00180 937 ProSiteProfiles IQ motif profile. 731 759 IPR000048 GO:0005515
Cmo08g00180 937 MobiDBLite consensus disorder prediction 123 181 - -
Cmo08g00180 937 ProSiteProfiles Ankyrin repeat region circular profile. 613 639 - -
Cmo08g00180 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 839 IPR027417 -
Cmo08g00180 937 ProSiteProfiles IQ motif profile. 789 817 IPR000048 GO:0005515
Cmo08g00180 937 Pfam IQ calmodulin-binding motif 813 832 IPR000048 GO:0005515
Cmo08g00180 937 Pfam IQ calmodulin-binding motif 790 808 IPR000048 GO:0005515
Cmo08g00180 937 Pfam CG-1 domain 13 117 IPR005559 GO:0003677
Cmo08g00180 937 Gene3D Immunoglobulins 385 476 IPR013783 -
Cmo08g00180 937 ProSiteProfiles IQ motif profile. 811 835 IPR000048 GO:0005515
Cmo08g00180 937 Gene3D - 477 678 IPR036770 -
Cmo08g00180 937 Gene3D - 787 835 - -
Cmo08g00180 937 ProSiteProfiles Ankyrin repeat profile. 613 645 IPR002110 GO:0005515
Cmo08g00180 937 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 917 - -
Cmo08g00180 937 SMART CG_1_2 10 119 IPR005559 GO:0003677
Cmo08g00180 937 ProSiteProfiles CG-1 DNA-binding domain profile. 7 124 IPR005559 GO:0003677
Cmo08g00180 937 SMART iq_5 787 809 IPR000048 GO:0005515
Cmo08g00180 937 SMART iq_5 810 832 IPR000048 GO:0005515
Cmo08g00180 937 SMART iq_5 730 752 IPR000048 GO:0005515
Cmo08g00180 937 Pfam IPT/TIG domain 390 463 IPR002909 -
Cmo08g00180 937 SUPERFAMILY Ankyrin repeat 583 675 IPR036770 -
Cmo08g00180 937 MobiDBLite consensus disorder prediction 125 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00180 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1453.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00180 Cmo-Chr8:1057956 Cmo11g01484 Cmo-Chr11:10488400 4.18E-39 dispersed
Cmo17g01383 Cmo-Chr17:10724429 Cmo08g00180 Cmo-Chr8:1057956 3.30E-119 transposed
Cmo17g01384 Cmo-Chr17:10730213 Cmo08g00180 Cmo-Chr8:1057956 0 transposed
Cmo17g01382 Cmo-Chr17:10719368 Cmo08g00180 Cmo-Chr8:1057956 3.57E-62 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10213 PF03859 CG-1 9.00E-38 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00180 Cmo_Chr08 FPKM 8.995781 10.271309 14.380093 13.183197 7.951146 3.263595 7.222251 13.933396 5.525521 12.009158