Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00180 | ATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGCTGGCTGAAGCCTCCAGAGGTGTTCTTTATTTTACAGAATTATGAAAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAAAAAAGGGATGGAAGAACTGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTGGTACACTATAGAGATATTAATGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGAAACCGTACTGTTGGGTCAAATGGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGACATTGATCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCGTGATAATAATTATACATCGTTTGAAATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGGTTCACGTAAGACAGTTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCGTCTTTGAGTAAAAGTACAACTGTGGACAATGAACATTACAACTTGGTGCACAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAGCTACCATATACCATTTCTTACAGAAGACCAAGGAAATTCTTTTGAAGTTGATACCAGTTTCATTGTTCCACAAGTGCAGAAATTTATAATCCGCCAAATTGTTCCTGAGCAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAGATGAATGTTTGCAGTCATTGCTACTCACATTCTAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTGTTACTTGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCCGGCAGGCTGTTCCTTGTCCAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTATGTGTGGGCATTAAACCCAATTCTCAGTTGTGGTGTGAATATAAACTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCGGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGCTCTGTTGAGGTAGAAGCAGAAATGACTGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACGTTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACAGCAGAAAGAGGCAGTTTTTGCTGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAACGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCGATTCGTCAAAAAGTTGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTCGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTATTTCGCAAAGAAAAAGTGGAAGTTACTATCGATGAGGCTGTTTCACGAGTGCGATCGATGGTTAACTCTCTGGATGCTCGTCAGCAATATCATCGTACGCTTAAAGGATTTCGAGAAGCTAAGGATCGACTTCTCTCGTCGACATTTCTGGGACTGAAGATTGTAATCAATATCCTAAGGATTTGA | 2814 | 41.36 | MNAGYDINDLYREAQTRWLKPPEVFFILQNYEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNGADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKDIDPFYGHEEGSNSNLIDYYEMSNDDQFSVLQHSENAIRDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALGSRKTVDLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSSYHIPFLTEDQGNSFEVDTSFIVPQVQKFIIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSHCYSHSSGATKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSVEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKVFRKEKVEVTIDEAVSRVRSMVNSLDARQQYHRTLKGFREAKDRLLSSTFLGLKIVINILRI | 937 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1057956 | 1072099 | + | CmoCh08G001800.1 | Cmo08g00180 | 386913 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00180 | 937 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 | 1 | 917 | - | - | |
Cmo08g00180 | 937 | SMART | ANK_2a | 613 | 645 | IPR002110 | GO:0005515 | |
Cmo08g00180 | 937 | Pfam | Ankyrin repeats (3 copies) | 589 | 672 | IPR002110 | GO:0005515 | |
Cmo08g00180 | 937 | SUPERFAMILY | E set domains | 391 | 473 | IPR014756 | - | |
Cmo08g00180 | 937 | CDD | IPT | 396 | 474 | - | - | |
Cmo08g00180 | 937 | ProSiteProfiles | IQ motif profile. | 731 | 759 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | MobiDBLite | consensus disorder prediction | 123 | 181 | - | - | |
Cmo08g00180 | 937 | ProSiteProfiles | Ankyrin repeat region circular profile. | 613 | 639 | - | - | |
Cmo08g00180 | 937 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 736 | 839 | IPR027417 | - | |
Cmo08g00180 | 937 | ProSiteProfiles | IQ motif profile. | 789 | 817 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | Pfam | IQ calmodulin-binding motif | 813 | 832 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | Pfam | IQ calmodulin-binding motif | 790 | 808 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | Pfam | CG-1 domain | 13 | 117 | IPR005559 | GO:0003677 | |
Cmo08g00180 | 937 | Gene3D | Immunoglobulins | 385 | 476 | IPR013783 | - | |
Cmo08g00180 | 937 | ProSiteProfiles | IQ motif profile. | 811 | 835 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | Gene3D | - | 477 | 678 | IPR036770 | - | |
Cmo08g00180 | 937 | Gene3D | - | 787 | 835 | - | - | |
Cmo08g00180 | 937 | ProSiteProfiles | Ankyrin repeat profile. | 613 | 645 | IPR002110 | GO:0005515 | |
Cmo08g00180 | 937 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 1 | 917 | - | - | |
Cmo08g00180 | 937 | SMART | CG_1_2 | 10 | 119 | IPR005559 | GO:0003677 | |
Cmo08g00180 | 937 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 7 | 124 | IPR005559 | GO:0003677 | |
Cmo08g00180 | 937 | SMART | iq_5 | 787 | 809 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | SMART | iq_5 | 810 | 832 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | SMART | iq_5 | 730 | 752 | IPR000048 | GO:0005515 | |
Cmo08g00180 | 937 | Pfam | IPT/TIG domain | 390 | 463 | IPR002909 | - | |
Cmo08g00180 | 937 | SUPERFAMILY | Ankyrin repeat | 583 | 675 | IPR036770 | - | |
Cmo08g00180 | 937 | MobiDBLite | consensus disorder prediction | 125 | 178 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00180 | Cmo-Chr8:1057956 | Cmo11g01484 | Cmo-Chr11:10488400 | 4.18E-39 | dispersed | |
Cmo17g01383 | Cmo-Chr17:10724429 | Cmo08g00180 | Cmo-Chr8:1057956 | 3.30E-119 | transposed | |
Cmo17g01384 | Cmo-Chr17:10730213 | Cmo08g00180 | Cmo-Chr8:1057956 | 0 | transposed | |
Cmo17g01382 | Cmo-Chr17:10719368 | Cmo08g00180 | Cmo-Chr8:1057956 | 3.57E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10213 | PF03859 | CG-1 | 9.00E-38 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00180 | K21596 | - | csv:101222798 | 1453.73 |