Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00183 ATGAACTGGTTCATTAATGAAGTCATGGAAGCCAAGGGTGGTTTGGTATGGGTCCAGTTTTGGGAGAAGCTCATTGGAAAGTGCTGCAAGATGCATCACCAGTACTATCAGTATATTGGATCCAAGAAGGCCAGAAACACTTGGTGGAGAAGGGTTTTGGTGGCCTGGGTTCTTTGTTCTGTGTTTGGTTCTTTGTGGATCTTCCATTACATGAGCTCTCAAGCTACAGAGAAGAGGAAAGAGGGGTTGGGAAGCATGTGTGATGAGCGGGCTAGGATGCTTCAAGATCAGTTCAATGTCAGTATGAACCATATCCAAGCAATGTCCATACTCATCTCCACCTTCCATCATGCCAAGAACCCTTCTGCTATAGATCAGAGGACATTTGCGAGGTACACGGAACGAACTGCGTTCGAGAGGCCTCTTACCAGTGGTGTGGCGTATGCGGTAAGGGTGCTCCATTCGGAACGAGAGCGTTTCGAGAAGCAGCAGGGGTGGACAATTAAAAGGATGGATAAAATTGAACAAAGTCCGGTTCATGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCGGCGACCCAAGACGAATATGCTCCCGTTATCTTCGCACAGGATACGATTTCTCATGTCGTTTCTCTTGATATGCTGTCGGGAAAGGAAGACAGGAAGAACGTTTTACGAGCTAGAGCATCGGGAAAGGGAGTGTTAACAGCTCCATTCAAATTGATCAAAACAAATCGCCTGGGAGTCATACTTACGTTTGCTGTGTACAAGAGAGATCTTCCCTCGAATGCCACTCCAAACGAGAGGATTCAAGCTACAGATGGATATCTTGGGGGAGTTTTTGATATCGAGTCGCTCGTGGAGAAGCTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACTACGAACCAATCACACCCGATCAGTATGTACGGTAAAGACGTATCAGAAGACGGGTTGCAGCATGTTAGCCCGCTTAACTTTGGTGATCCAGATAGGAAGCACGAGATGCGATGCAGATTCAAACAAAAACAACCATGGCCATGGTTAGCAATATCAACTTCAATTGGCATACTCATTATTGCATTGCTTTTGGGGTATATATTTCACGCAACCTTGAACCGTATCACGAAAGTGGAGGACGATTATCACGAGATGATGGAACTCAAGAAACGGGCAGAAGCTGCTGATGTTGCGAAATCTCAGTTCCTTGCAACCGTGTCTCATGAGATCAGATCCCCAATGAACGGCGTTCTAGGGATGTTGGATTTGCTTATGGACACAGGCTTGGATTTCACCCAACAAGATTTTGTTAGAAGTGTACAAGATAGTGGAAAAGCTTTGGTGTCATTGGTAAATGAGGTTTTGGATCAAGCAAAGATTGAATCTGGAAAGCTTGAGCTTGAAGCCATTCCATTCAATCTGCAAGCAATTTTGGATGATATTTTGTCACTTTTTTCTGGGAAATCTCAAGAAAAAGGATTGGAGCTCGCAGTTTACATCTCGGACAGCGTCCCCGAGATGCTTGTCGGTGATCCGGGAAGGTTTAGGCAAATCATCACGAATCTCGTGGGGAACTCGATCAAGTTCACAGAGCAAGGACATATATTTATCACAGTTAATGTCGTTGAGGAGGTTCTTGAGTCGATTGATCTCGAGATCGAGTCATCAACGAATAGCACGTTGAGTGGCTATCCGGTTGCCAATAGGCGTCTCAGCTGGGCTGGATTTCAAACATTGAGTCAAGACGGACCGACGGCTTGTCATTTCCCGCCATTGTCACCAGACCATATTAACCTCATGGTATCCGTGGAAGATACAGGCGTTGGCATTCCCCTAGAAGCGCAATCACATGTTTTCACTCCCTTCATGCAGGTTCGACCGTCGACATCTAGAACGCACGGAGGAACGGGTATCGGGCTGAGTATTAGCAAATGTTTGGTTGGTCTGATGAAGGGGGAGATTGGTTTTGCAAGTGTACCTACGATTGGCTCGACCTTCACATTTACTGCGGTTTTCTCGAACGAGCCAAGTGAGTATGACAAATCCCAGCAAATTAAGAACACTTCCATCTCAGCGTCCTCGGCATTTAAGGGCATGAGGGCATTAGTCGTGGACCATCGACCGATTCGAGCCAAAGTATCGAGATATCATATTCAACGTCTTGGAATAAACGTCGAGTTATTACCTGACTTGAACCAATGTGTGCATACCACCATGATTGGTGGTTCAGCTATCAATATGATCTTTGTTGAGCAAGATCTTTGGGATAAGGATATGAGCATATCAGATGTTCTTATCCACAACTTGAGAAATTCAAATGGGGTTCCTCCCAAACTGTTTCTTCTTACTAACTCCAGCGATATAATTTCTGATGTACTAACTCCCATACTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTCTACACCGGTTCATGGGCGTCGGAATTAATCGCAACGGAGAGCTTCCTGTACACTCTCTCCATCATCTACTTCTCGGTCGGAAAATTCTTATCATAGATGACAATAAGGTTAACCGTATCGTTGCTGCTGGTGCTCTAAAACGGTATGGAGCTGATGTCGTATGCAAAAACAGTGGAATAGATGCCATCCGATTGCTTACGCCACCCCATCGATTCGATGCTTGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCTACACGAAGAATTCGGGAAATCGAATGTCGTATCAACGACAGTATCGAAGTTGGAGAACAATCAAAAGAAGCATACGAAAATAAATGTAATTGGCACGTACCCATCTTCGCCATGACTGCAGACGTAATCCAGGCGACACATGAGAAATGTCTTCGGTGTGGGATGGATGGATACGTTACGAAGCCATTTGAAATCGATCGACTTTACCGAGAGGTTTCTCAGTTTTTCCACAGTACCTCAAATGGAACTTTATAG 2979 45.22 MNWFINEVMEAKGGLVWVQFWEKLIGKCCKMHHQYYQYIGSKKARNTWWRRVLVAWVLCSVFGSLWIFHYMSSQATEKRKEGLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSERERFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSATQDEYAPVIFAQDTISHVVSLDMLSGKEDRKNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAISTSIGILIIALLLGYIFHATLNRITKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRSPMNGVLGMLDLLMDTGLDFTQQDFVRSVQDSGKALVSLVNEVLDQAKIESGKLELEAIPFNLQAILDDILSLFSGKSQEKGLELAVYISDSVPEMLVGDPGRFRQIITNLVGNSIKFTEQGHIFITVNVVEEVLESIDLEIESSTNSTLSGYPVANRRLSWAGFQTLSQDGPTACHFPPLSPDHINLMVSVEDTGVGIPLEAQSHVFTPFMQVRPSTSRTHGGTGIGLSISKCLVGLMKGEIGFASVPTIGSTFTFTAVFSNEPSEYDKSQQIKNTSISASSAFKGMRALVVDHRPIRAKVSRYHIQRLGINVELLPDLNQCVHTTMIGGSAINMIFVEQDLWDKDMSISDVLIHNLRNSNGVPPKLFLLTNSSDIISDVLTPILILKPLRAGMLAASLHRFMGVGINRNGELPVHSLHHLLLGRKILIIDDNKVNRIVAAGALKRYGADVVCKNSGIDAIRLLTPPHRFDACFMDIQMPEMDGFEATRRIREIECRINDSIEVGEQSKEAYENKCNWHVPIFAMTADVIQATHEKCLRCGMDGYVTKPFEIDRLYREVSQFFHSTSNGTL 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1074486 1079665 - CmoCh08G001830.1 Cmo08g00183 386916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00183 992 Gene3D - 471 684 IPR036890 -
Cmo08g00183 992 SMART CHASE_2 120 321 IPR006189 -
Cmo08g00183 992 SUPERFAMILY CheY-like 705 824 IPR011006 -
Cmo08g00183 992 CDD HisKA 407 468 IPR003661 GO:0000155|GO:0007165
Cmo08g00183 992 Pfam Response regulator receiver domain 848 979 IPR001789 GO:0000160
Cmo08g00183 992 Gene3D CHASE domain 124 353 IPR042240 -
Cmo08g00183 992 SUPERFAMILY CheY-like 845 984 IPR011006 -
Cmo08g00183 992 Gene3D - 843 988 - -
Cmo08g00183 992 CDD PRTases_typeI 797 873 IPR000836 -
Cmo08g00183 992 ProSiteProfiles Histidine kinase domain profile. 414 683 IPR005467 -
Cmo08g00183 992 SMART REC_2 846 980 IPR001789 GO:0000160
Cmo08g00183 992 CDD REC_hyHK_CKI1_RcsC-like 848 980 - -
Cmo08g00183 992 Pfam His Kinase A (phospho-acceptor) domain 407 472 IPR003661 GO:0000155|GO:0007165
Cmo08g00183 992 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 986 - -
Cmo08g00183 992 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 461 678 IPR036890 -
Cmo08g00183 992 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 681 IPR003594 -
Cmo08g00183 992 PANTHER HISTIDINE KINASE 3 24 986 - -
Cmo08g00183 992 ProSiteProfiles CHASE domain profile. 120 346 IPR006189 -
Cmo08g00183 992 PRINTS Bacterial sensor protein C-terminal signature 608 622 IPR004358 GO:0016310|GO:0016772
Cmo08g00183 992 PRINTS Bacterial sensor protein C-terminal signature 626 636 IPR004358 GO:0016310|GO:0016772
Cmo08g00183 992 PRINTS Bacterial sensor protein C-terminal signature 643 661 IPR004358 GO:0016310|GO:0016772
Cmo08g00183 992 SMART HKATPase_4 519 683 IPR003594 -
Cmo08g00183 992 ProSiteProfiles Response regulatory domain profile. 847 984 IPR001789 GO:0000160
Cmo08g00183 992 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 392 473 IPR036097 GO:0000155|GO:0007165
Cmo08g00183 992 Gene3D - 71 123 - -
Cmo08g00183 992 Pfam CHASE domain 123 319 IPR006189 -
Cmo08g00183 992 Gene3D - 376 470 - -
Cmo08g00183 992 Coils Coil 384 404 - -
Cmo08g00183 992 SMART HisKA_10 407 472 IPR003661 GO:0000155|GO:0007165
Cmo08g00183 992 CDD HATPase_EvgS-ArcB-TorS-like 524 681 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02235 Cmo-Chr4:16716157 Cmo08g00183 Cmo-Chr8:1074486 0 dispersed
Cmo08g00183 Cmo-Chr8:1074486 Cmo11g01837 Cmo-Chr11:12825491 0 dispersed
Cmo17g01037 Cmo-Chr17:8811858 Cmo08g00183 Cmo-Chr8:1074486 2.15E-35 dispersed
Cmo17g01385 Cmo-Chr17:10735030 Cmo08g00183 Cmo-Chr8:1074486 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10214 PF03924 CHASE 2.00E-38 CL0165 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00183 K14489 - csv:101216313 1690.63