Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00192 ATGGGCAAGAGAAAGAGCCATAAGCAAGAAAAAAGGAACTCTAAGAGAAGAGTCGCAGACGATGATGCTGCCTCTGAAGATATGGACGATGAAATTGATGCCTTTCACAGGCAGAGAGATGTTATTCCACTTGATATTAATGGTGATGCTCCGGAGTCAGATGAAGATGCTGAGCATCCTGTTTTTAATTTAGAGGGTGTTGACGATGAAGATGAAGATGAAGATGAAGATGAATATGAAGATGAAGATGATGATGAAGAAGATATCCGTGATACTGGTTTTGCTGCAAAAATTGCCAGACAACAGAAGTTCTTGCGGGAAAAGTTTGGTGGCGTAGATGATGAAATGCACGAGGATGAAGATGAGGACATGGAAGAACAAAAGACTATATGGGGTGGAAGGAAAGGCAAATACTATGATGCTGATAATCGTGATTTTGAAATCCAATCAAGTGATGATGAGTCCCTTGCCGAAGAGGAGGAAGAGGTAATTCGATTGCAGAAGGAGAAAGCAAAAACTTTCTCATTGGAAGATTTTGGCATTGACGATGAGAGTGATAGGGAGTTAACTCTAGAGGAAATATCTGCAAAAGGAATTGATCCAAAAACTTCAACCAGAAATGAAGCTCCAGATGATATGAATGCCACATATCAGGAGATTGCTAAAGACGTGAATTCTCTTACAAGGGAGGAGCAGATGGATGTCTTGAACAGTTCTGCTCCAGAGTTAATTGGTTTGCTGTCCGAATTGAATGAAGCAGTGGATCAACTTGAGAGCAAAATTAATCCAGTTTTAAACAAGGTTAAAAACGGGAAAATTGCAGTGGGAGCAGGACTGCAATATTTGGAGTTAAAGCAGCTTATTTTGCTCTCTTATTGCCAAGCTATAGCCTTCTATCTTCTCTTGAAGTCTGAAGGGCAAGCAGTACGAGATCATCCTGTAATAGCTCGGCTTGTAGAGATAAAAAGCTTATTGGATAAGGTGAAACAACTTGACGAGAATCTTCCATCTGAGTTAGAAGAGATCATTAACAAATATCATCAAGAAGAAACAGATGTAAAACTGAACAAAGAGCATGCTTCTGTTTTAGCTGAGCTCTTCACAAAAGATCAGGGGTCTTCTCATCACGCTTCTGATGGCCAAGAAGTGGGATTGCCCAATGCAAAGACCGGGTCAGACAACGTGGATAAATTGAAGGAGAAAGGCAAGAAAGAAGGAAAGCATAAACAAGTGGACAATCAAATGGGTGTCCAGAGCATGGAAATGTTAAAAGTAAGAGCCCTCCTTGAAGAAAAGCTAAAACAAAAGGACTTCACTCTAATTGAACCAAAGCAAAATGGAGCAATGAAGCACCTGCAACCAATTAATCGGAAGCTCGAAGCATATGACGATTTTAAGGATGATACTGATGCTCAAGCTGCTAAGAGGAAGGGCCGAGATACTTCTGCCGGTGCAGCAGATCTCACCCGTCTTGTTGTCGCCAAGCTGAAGAAGCCAAAGGTCATTTCTGGTGATGATGATTTGCCTACAAGAGATGATATTGGGGAACGACGGAGGAAATATGAACTTCAAATGCTGGCGAGAGCTGGATTCAAGTCAAAGGACGACACTAGCGTTCTTGAGAGTGAAAGCGACGGTGACGAGGGGGATGTGAAAGGAAATGTTGAAGCAGATTCTGAAGATGAATTCTACAAGGAAGTCAAACAACAACGTGCTGCAAAACTTGCTGCCAAGGCTGAAATTTACTCCAGGACGACGGAAATTCCATCGTCTCCGAAAACTGTGGATGGAAAACGCAAAATCACTTATCAAATGGAGAAGAACCGAGGCTTAACTCGACCTCGAAAGAAGTTGACGAAGAACCCAAGAAAGAAATACAAGTTGAAGTTTAAAGATGCAGCTAATCGTCGTAAAGGTCAAGTCCGAGAAGTTAAGCAGCCTATTCATTCGTACGGTGGAGAGACGACAGGAATTAACACAGGAATCAGTCGGAGCATCCGGTTTAAGAGTTAG 2013 41.93 MGKRKSHKQEKRNSKRRVADDDAASEDMDDEIDAFHRQRDVIPLDINGDAPESDEDAEHPVFNLEGVDDEDEDEDEDEYEDEDDDEEDIRDTGFAAKIARQQKFLREKFGGVDDEMHEDEDEDMEEQKTIWGGRKGKYYDADNRDFEIQSSDDESLAEEEEEVIRLQKEKAKTFSLEDFGIDDESDRELTLEEISAKGIDPKTSTRNEAPDDMNATYQEIAKDVNSLTREEQMDVLNSSAPELIGLLSELNEAVDQLESKINPVLNKVKNGKIAVGAGLQYLELKQLILLSYCQAIAFYLLLKSEGQAVRDHPVIARLVEIKSLLDKVKQLDENLPSELEEIINKYHQEETDVKLNKEHASVLAELFTKDQGSSHHASDGQEVGLPNAKTGSDNVDKLKEKGKKEGKHKQVDNQMGVQSMEMLKVRALLEEKLKQKDFTLIEPKQNGAMKHLQPINRKLEAYDDFKDDTDAQAAKRKGRDTSAGAADLTRLVVAKLKKPKVISGDDDLPTRDDIGERRRKYELQMLARAGFKSKDDTSVLESESDGDEGDVKGNVEADSEDEFYKEVKQQRAAKLAAKAEIYSRTTEIPSSPKTVDGKRKITYQMEKNRGLTRPRKKLTKNPRKKYKLKFKDAANRRKGQVREVKQPIHSYGGETTGINTGISRSIRFKS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1113569 1121766 - CmoCh08G001920.1 Cmo08g00192 386925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00192 670 MobiDBLite consensus disorder prediction 393 411 - -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 633 670 - -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 65 89 - -
Cmo08g00192 670 Pfam Sas10/Utp3/C1D family 247 327 IPR007146 -
Cmo08g00192 670 PANTHER SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 6 668 IPR007146 -
Cmo08g00192 670 PANTHER SOMETHING ABOUT SILENCING PROTEIN 10 6 668 - -
Cmo08g00192 670 Pfam Sas10 C-terminal domain 596 668 IPR018972 -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 109 129 - -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 369 388 - -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 652 670 - -
Cmo08g00192 670 Coils Coil 321 341 - -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 534 554 - -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 1 91 - -
Cmo08g00192 670 Coils Coil 240 267 - -
Cmo08g00192 670 MobiDBLite consensus disorder prediction 369 413 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00192 K14767 UTP3, SAS10; U3 small nucleolar RNA-associated protein 3 - csv:101211748 980.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01526 Cmo-Chr1:11764484 Cmo08g00192 Cmo-Chr8:1113569 8.90E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1317 . . . . . . . . Cmo08g00192 . . . . . . . . . . . . . . . Cla06g00101 Cam06g0114 Cec06g0113 Cco06g0112 Clacu06g0114 Cmu06g0112 Cre06g0882 . . . . . . . . . . . . . . . . Sed09g0151 . . . . Car08g00170 . . Cpe17g01080 Bhi12g02474 Tan06g2240 Cmetu05g1545 Lac12g1976 . . Lcy13g0854 . . . . . . . . . . Cme11g02437
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005413 1 6 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 3 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00192 Cmo_Chr08 FPKM 13.838502 14.046473 8.867418 8.904689 13.958093 13.914213 12.087484 10.157567 10.06531 9.387355