Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00196 ATGCCGAAGCAAATTAACGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGCTCTGTGAAAATCAAGAGAAGCAAAGATGTGGTCAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATACTCTCTGTGTTTTCGACTCCGAGAAGGCAGAAAAGTTGAAGCAGTCTCTTCCACCAGGTTTGAGTGTGCAAGATCTTGTACTGTTTGTGCGTACTCTTTCCATTTTCTTGCTCAATCTATCTGTATTTCTCCGCCGCCGCCGGTTTCTTGGCACCTTGAGCATAACAGAACCGAATAGCGTTCTGTATGTTTTCGTATCTTATGTTTTATCTCATGTCAATATGCAGCCGAAGCAAATTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCCGTGAAAATCAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCTAAGTATCTGTATACTCTCTGTGTTTTCGACTCTGAGAAAGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG 546 42.31 MPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKAEKLKQSLPPGLSVQDLVLFVRTLSIFLLNLSVFLRRRRFLGTLSITEPNSVLYVFVSYVLSHVNMQPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1144106 1147195 + CmoCh08G001960.1 Cmo08g00196 386929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00196 181 PANTHER 60S RIBOSOMAL PROTEIN L38 120 181 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cmo08g00196 181 PANTHER 60S RIBOSOMAL PROTEIN L38 120 181 - -
Cmo08g00196 181 Pfam Ribosomal L38e protein family 2 68 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cmo08g00196 181 Pfam Ribosomal L38e protein family 120 181 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cmo08g00196 181 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 IPR002675 GO:0003735|GO:0005840|GO:0006412
Cmo08g00196 181 PANTHER 60S RIBOSOMAL PROTEIN L38 1 69 - -
Cmo08g00196 181 Gene3D - 119 181 IPR038464 -
Cmo08g00196 181 Gene3D - 1 69 IPR038464 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00196 K02923 RP-L38e, RPL38; large subunit ribosomal protein L38e - thj:104805270 135.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00855 Cmo-Chr5:5480413 Cmo08g00196 Cmo-Chr8:1144106 1.40E-38 dispersed
Cmo05g00856 Cmo-Chr5:5483668 Cmo08g00196 Cmo-Chr8:1144106 1.53E-36 dispersed
Cmo08g00196 Cmo-Chr8:1144106 Cmo01g00523 Cmo-Chr1:2527379 2.19E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1279 . . . . . . . . Cmo08g00196 . . . . . . . . . . . . . . . Cla06g00091 Cam06g0127 Cec06g0103 Cco06g0098 Clacu06g0102 Cmu06g0099 Cre06g0870 . . . . . . . . . . . . . . . . Sed09g0403 . . . . . . . Cpe17g01085 Bhi12g02498 Tan06g1556 Cmetu11g0956 . . . . . . . . . . . . . . Cme11g02452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001020 4 4 4 5 4 1 0 2 2 3 1 1 4 2 3 2 1 4 3 1 2 2 4 2 5 2 2 4 3 2 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00196 Cmo_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0