Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00197 ATGGCGAATCTGGTTCCTGGAGTGCTTCTTAAACTGTTGCAGCATATGAACACTGATGTGAAGGTTGCCGGTGAGCACAGGTCGGCGTTGTTGCAAGTTGTGAGTATAGTTCCGGCATTGGCCGGCGGCGATCTTTCACCGAATCAAGGTTTTTATCTCAAAGTCTCTGATTCTTCTCATGCTACTTATGTTTCATTGCCTGATGAACATGGTGATCTGATTCTTAGTGATAAGATTCAATTGGGTCAGTTTATTCATGTTGAACGCCTTGAGTCTGCGTCCCCTGTCCCCGTTCTTCAAGGCGTTCGACCGGTACCCGGTCGACATCCTTGTGTAGGTAGCCCTGAAGATATTGTTGCTACTCATTCTCCTGGTTTTCTTAACAATAATCCTAACTTGAAACCATTGGAGAAATCGAAACCGACCCCGAAAGTCTTAGGCATTGTCGGGGAGAAGGAGAAATCTCTGCCTGTTAGACTCAATGGCAATGTTAAGGAGGATAAGATTGAGAAGAAATCCTCATCGTTGAGTAGATCCAAGTCTCAGTTGTCGAAATTGGCGGTGAATATTGATCCGAAAAAGGAGCCTCTAACGAGACTTAAGTCGATGAATTCACGGTCGATACCTTCCTCTCCGACGAGCTGTTATTCATTGCCTTCTTCGTTTGAGAAGTTTGCTAACAGCATTAAGCATCAGGGGAAGGTTAAAGCGTTGGCTAATGGAACGGCCAAGGTAGGGGCGGTTGAGAAGTCGAATTCTGTTCGTTCGGCTAGTCCCGTCGCTAAGAAGATGGGAATGGGACATCAATTCAAGCATTTAGTTCAGGGCATTGAGGTTGGGGCTAAGGCTCTGAGGAAGAGTTGGGAAGGGAATATGGAGACAAAAAGACGAGACAATTCGATATTAAGAGCTACCAAACTCGACCCCAAGTCCGAAGTTCGGGTTACTACTCCTAGAAGAAGTACATCGAGCGAGAAGTTGCCATCGAGAGAGGAGAATAGGATTCAGGTACCTGCAAAGTCATCTAAAGACGATCATAGCGTGCACATGTCTTCACGGAAGAACACCGCTAACGGAGCCTTAGATGATCAAGATAGGTCAAATAGGCAAAAATCTTCCGGTGGAAAGAAATCCTCGAGCGATGCAGGCGGATTCCCCGGGAATTTGGTGAAGATTCCTCTTAGTCATAAAAGATTGACTGAGGGGAGTGCCTCATGGGCTTCACTTCCATCATCTCTTGCCAAGCTTGGAAAGGAAGTAATGAGGCACAGAGATGCTGCACAAGCAGCAGCAATAGAGGCTATGCAAGAAGCTTCAGCTGCCGAAAGCGTATTACGGTGTTTAAGTATATTTTCCGAGTTAAATGCTGCGGCGAAGGAGGATAATCCACAGCCTGCAGTAGAACAGTTTCTGACGCTTCATGCTAGCCTGACCAATGCTCATATGGTGGCTGAATCTCTTTCGAAAACGGGTCCCTCTGGTTCGATCAATGAGAGCGAAGAAACCGCTTCAGAAGAAACGATGAAGGTCTCGTTAAAGGCTAGAAAACAGGCATCTGCTTGGGTCCTGGCTGCTTTAGCCACCAACATGTCGTCTTTCGCAGTTTATAGCCGTGATCCACCCTCGGCTCTAAATCCGATCTCGTCTCTATCCCAAAACCAAAAGAATGCATCTGCAAATCAGCCTATAGTAGTTTTAGAAAACTCGTCTAAGAACAGCTCGTCGAAATCCCAAGGGAAGGTTCGCCAGATGATAAACTCTAAACCGATTGGATCAGGAAATCCCGGTCGAACAAAGGAGGGAACGACACTCGGTCAAAAGTTGCAGGCTCAACCTCCCCCAGAATGGATCAGAGGAAATGGTCTCGACGAAGCGGTTGACTTGGCCGAGATGTTACGGCTGCAATCCCAGGACTGGTTCTTGACATTCATGGAAAGGTTCTTGGATGCAGGCGTCGACACTGCAGCATTGTCGGATAACGGACAAATCGCAGGAATCTTGACTCAGCTTAAGAGCGTAAACGACTGGTTAGATGGCATAGCTTCTACCAAAGACGAAGAAGACCCCACCGACATTTCGACCGAGACAATCGACAGGCTGAGGAAGAAGATCTACGAGTATCTTCTCATGCATGTCGAGTCTGCAGCCGCTGCACTTGGCGGGGGATCGCAGCAACTGCCACAGCCGATACAGGCAACCGGAACGAAAGCCAAAAGACCTGGGTTTGTTCAGTTCAGCTTTACACATATCATCAACTGTACATTCTGTTTGCCGCCTCTTCCCCAAATGAGCCGACAGCAACTGTATAGGGACTCGGACGTTACGGAGATGTCTTCCAACAGCTTGTGGGTAGGCAACTTGTCCATGGATGTCACGGATACGGATCTCATGAATATGTTTGCGCAGTTTGGGGCGATTGATAGTGTTTCTTCCTATCCTTCCAGGAGTTACGCTTTCATCTTCTTCAAGCACATGGAGGATGCTCAAGCGGCTAAGGAGGCTCTTCAAGGGGTTTTTCTGCGTGGGAGTTCAATCAAAATCGAGTTTGCGAGACCGGCCAAACCTTGTAGGAATTTATGGGTCGGCGGTATTAGTCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTTCCAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGGAATACTGCATTTATTGAGTATGTTCGGTTAGAAGATGCATCACAAGCTTTGAGAATCATGAACGGGAAACGCATTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGATCACAGCCGATGAGAAGAGACCAGTGGCCCGACTCCCGAGATGGGCATGGGCAGCTTCAGGGTAGAAATGTGGGGATGGCTGATTTCCAATCTGGTTATAAAAGACCTCTGCATACTCAATCTTCAGAACTACGTAGAGATGGACCTCCCAGCAAGGTTTTGTGGATTGGTTACCCTCCATCTGTTCAAATTGATGAACAAATGCTCCACAATGCGATGATTTTATTTGGTGAAATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCGCGGCGTGCTAAGGAGGGTCTACAAGGACGGCTTTTTAATGATCCTCGGATTACTATTATGTTTTCAAACAGTGATCCGGCACCTGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGACTAGGCCTGAAATGTTCTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACATGTTAGGACATCCTCACCCAATGGTGCAAAATAAGTTCCCTGGTCCATTGCCAGCTAATGGCATTCTTGGACCAAATACAGCAGTAAGACCACCACCCTTTGGTCCTCCACAGGGTATCTCAGGCCCTCCTGAGTTTAATGACTTCACGACATCGCATGGTTTCCATGATGCAAATTCAAAAAATGTGTTGGGTCCAAATTGGAGAAGGCCATCTCCTCCTGCACCTGGGATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCTGTGAGGTCCACTCCAAATTCGTGGGATGTTTTGGATGTAAACCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCATCATCCTTAGACGATGCTTCTTTTCCTCCAAGAAAAATGGATAACCGGGGCATGGGTTTTGATCAGCAATATGGGGTTGGTCCATTAAGTGATGGAGGATCTTCTGTTTCATATACCAATGCTCCTGTGAAGACTCATGCTATCCCTATAGGTGCAAGGGCACCAGTTAGTGGCCAGAGCCATGGTGACAATGATTTTATATGGCGTGGAATAATTGCCAAGGGTGGAACGCCTGTTTGTCATGCTCGTTGTGTCCCCATAGGCGAAGGAATAGGAAGTGATCTTCCTGAAGCAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTTGCTAAACATTATGCTGAAGCCACTGGATTTGACATTGTCTTTTTCTTGCCAGACAGCGAGGATGACTTTGCATCCTATACAGAATTCCTGCGTTACCTTGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCAGAGTTTTTGAGAAAAGTCTTGAAAGTTGCGGGCCCAGAACGGCTTTATGGTCTCATTCTCAAATTTCCCCAGGTTCCTCTTAGTGAATCGACTCACCAGCAGTCCTATCTACCCATTCCTACATCTGACTATGGTGAGAGACAGCAAGTCTTGTCTTCACGAGCTGAATACGGGTCAGTGCCTTCAAAGCAGGAGCAACTTCTTCCAATGGATTATAATAGGGTTCTGCATGAGGAAACCAAGGAACCCCCGAAACCCCTTCTACCTGCAAGTGAGCCACCATCTGTTCAGTCCTTGCCTCACGAGTATGTTACTAACAATAATACGGCTGCAGTCTCACAAGCTGGGTTATCATTAACACCAGAGCTTATTGCCACCTTAGTTTCTTTACTGCCTGGCAAGACACAGTCGTCCAGTTTAGAAAGTGCCAAGCAACCAGCCATCTCACCACAGCCTCCAATGCCTACTGTTGATTCTAATAAAGGGACTACATCTGAGGGATGGATTGGTCATCAATCTTCTGAGCTAACCGGTCAGCCATTTCAGCAAATGGAAAATCATTTTAATTCTCAGGGACAAAGTCTTTCTCAATTTCAGCCTTATCCACCTCTCCCGCAAACACCAAACCAGCATGCACCACAGATCATGGGAGCAACCCAAATTCAAGATGCTGCTGTCGGTCTGCCACAGCAGCAGCATGTACCTATTCCTTACAGGCCTTTGTCTACTTATTCTGCCCCTCCTGAGAATGCACAAGCTTCTGGTTTGCCCTTTGTCAATCCTCAGTATCAGCACGATGTTTCTCAAATTAACCAGAGAGGTTATGGGTCAGTCAATGAAGTTGATACTTCTGGGTATGGTGCACCAGTTGTGCAGCAATCAACGAACACTGCGACCTTATCTAATCAAGGTCAGGGTTCTACATCACAGCCACAACCTGTTACCCATTTAGCATCTGATAGGGGGAACCCTGAGCTTCCTTATCAGATGGAGCATCTCCAATCTGCAAACCTTGGCGCTGGCAATGGGACCAGTGATGTTGAGGCTGGTAAGGACCAGAGATATCGATCTACGCTTCAATTTGCCGCAAATTTACTCCTTCAGATCCAGCAGCAGCAGCAGCAGCCACAGCAAGCAGGCTGGGGTTCAGGAAATCAATAA 5280 46.53 MANLVPGVLLKLLQHMNTDVKVAGEHRSALLQVVSIVPALAGGDLSPNQGFYLKVSDSSHATYVSLPDEHGDLILSDKIQLGQFIHVERLESASPVPVLQGVRPVPGRHPCVGSPEDIVATHSPGFLNNNPNLKPLEKSKPTPKVLGIVGEKEKSLPVRLNGNVKEDKIEKKSSSLSRSKSQLSKLAVNIDPKKEPLTRLKSMNSRSIPSSPTSCYSLPSSFEKFANSIKHQGKVKALANGTAKVGAVEKSNSVRSASPVAKKMGMGHQFKHLVQGIEVGAKALRKSWEGNMETKRRDNSILRATKLDPKSEVRVTTPRRSTSSEKLPSREENRIQVPAKSSKDDHSVHMSSRKNTANGALDDQDRSNRQKSSGGKKSSSDAGGFPGNLVKIPLSHKRLTEGSASWASLPSSLAKLGKEVMRHRDAAQAAAIEAMQEASAAESVLRCLSIFSELNAAAKEDNPQPAVEQFLTLHASLTNAHMVAESLSKTGPSGSINESEETASEETMKVSLKARKQASAWVLAALATNMSSFAVYSRDPPSALNPISSLSQNQKNASANQPIVVLENSSKNSSSKSQGKVRQMINSKPIGSGNPGRTKEGTTLGQKLQAQPPPEWIRGNGLDEAVDLAEMLRLQSQDWFLTFMERFLDAGVDTAALSDNGQIAGILTQLKSVNDWLDGIASTKDEEDPTDISTETIDRLRKKIYEYLLMHVESAAAALGGGSQQLPQPIQATGTKAKRPGFVQFSFTHIINCTFCLPPLPQMSRQQLYRDSDVTEMSSNSLWVGNLSMDVTDTDLMNMFAQFGAIDSVSSYPSRSYAFIFFKHMEDAQAAKEALQGVFLRGSSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFSKFGKIDEFKFLRDRNTAFIEYVRLEDASQALRIMNGKRIGGDQIRVDFLRSQPMRRDQWPDSRDGHGQLQGRNVGMADFQSGYKRPLHTQSSELRRDGPPSKVLWIGYPPSVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPAPVKEHPGFYPGGKETRPEMFFNEHQIRPPQMDMLGHPHPMVQNKFPGPLPANGILGPNTAVRPPPFGPPQGISGPPEFNDFTTSHGFHDANSKNVLGPNWRRPSPPAPGILSSPATGIRPPPPVRSTPNSWDVLDVNQFQRDSKRSRIDGPSSLDDASFPPRKMDNRGMGFDQQYGVGPLSDGGSSVSYTNAPVKTHAIPIGARAPVSGQSHGDNDFIWRGIIAKGGTPVCHARCVPIGEGIGSDLPEAVNCSARTGLDQLAKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVAGPERLYGLILKFPQVPLSESTHQQSYLPIPTSDYGERQQVLSSRAEYGSVPSKQEQLLPMDYNRVLHEETKEPPKPLLPASEPPSVQSLPHEYVTNNNTAAVSQAGLSLTPELIATLVSLLPGKTQSSSLESAKQPAISPQPPMPTVDSNKGTTSEGWIGHQSSELTGQPFQQMENHFNSQGQSLSQFQPYPPLPQTPNQHAPQIMGATQIQDAAVGLPQQQHVPIPYRPLSTYSAPPENAQASGLPFVNPQYQHDVSQINQRGYGSVNEVDTSGYGAPVVQQSTNTATLSNQGQGSTSQPQPVTHLASDRGNPELPYQMEHLQSANLGAGNGTSDVEAGKDQRYRSTLQFAANLLLQIQQQQQQPQQAGWGSGNQ 1759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1154353 1171444 + CmoCh08G001970.1 Cmo08g00197 386930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 487 501 - -
Cmo08g00197 1759 CDD RRM3_Spen 859 928 - -
Cmo08g00197 1759 Gene3D - 762 853 IPR012677 -
Cmo08g00197 1759 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 857 929 IPR000504 GO:0003723
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 568 609 - -
Cmo08g00197 1759 CDD RRM3_Spen 782 851 - -
Cmo08g00197 1759 SMART rrm1_1 858 925 IPR000504 GO:0003723
Cmo08g00197 1759 SMART rrm1_1 781 848 IPR000504 GO:0003723
Cmo08g00197 1759 SMART rrm1_1 981 1049 IPR000504 GO:0003723
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 1453 1472 - -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 1157 1183 - -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 1671 1690 - -
Cmo08g00197 1759 SUPERFAMILY RNA-binding domain, RBD 854 951 IPR035979 GO:0003676
Cmo08g00197 1759 SUPERFAMILY RNA-binding domain, RBD 772 854 IPR035979 GO:0003676
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 290 389 - -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 487 507 - -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 290 315 - -
Cmo08g00197 1759 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 780 852 IPR000504 GO:0003723
Cmo08g00197 1759 PANTHER RNA RECOGNITION MOTIF-CONTAINING 767 1758 - -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 122 141 - -
Cmo08g00197 1759 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 767 1758 - -
Cmo08g00197 1759 SUPERFAMILY RNA-binding domain, RBD 975 1059 IPR035979 GO:0003676
Cmo08g00197 1759 Pfam SPOC domain 1267 1386 IPR012921 -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 1671 1698 - -
Cmo08g00197 1759 Gene3D - 967 1060 IPR012677 -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 1144 1220 - -
Cmo08g00197 1759 CDD RRM3_Spen 982 1052 - -
Cmo08g00197 1759 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 859 923 IPR000504 GO:0003723
Cmo08g00197 1759 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 992 1046 IPR000504 GO:0003723
Cmo08g00197 1759 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 782 846 IPR000504 GO:0003723
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 324 351 - -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 568 616 - -
Cmo08g00197 1759 Gene3D - 854 966 IPR012677 -
Cmo08g00197 1759 MobiDBLite consensus disorder prediction 1510 1538 - -
Cmo08g00197 1759 Pfam Plant protein of unknown function (DUF936) 4 719 IPR010341 -
Cmo08g00197 1759 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 980 1053 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00197 - - - cmos:111456063 1742.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00197 Cmo17g00590 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00197 Cmo-Chr8:1154353 Cmo20g00692 Cmo-Chr20:3416859 8.30E-07 dispersed
Cmo05g00980 Cmo-Chr5:7894414 Cmo08g00197 Cmo-Chr8:1154353 1.41E-17 transposed
Cmo08g00786 Cmo-Chr8:4959998 Cmo08g00197 Cmo-Chr8:1154353 9.60E-10 transposed
Cmo11g00594 Cmo-Chr11:2861586 Cmo08g00197 Cmo-Chr8:1154353 3.41E-28 transposed
Cmo17g00591 Cmo-Chr17:6272311 Cmo08g00197 Cmo-Chr8:1154353 0 transposed
Cmo17g00891 Cmo-Chr17:8091881 Cmo08g00197 Cmo-Chr8:1154353 2.82E-31 transposed
Cmo17g00590 Cmo-Chr17:6258442 Cmo08g00197 Cmo-Chr8:1154353 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00197 Cmo_Chr08 FPKM 52.087875 55.775471 156.364075 157.01918 6.204259 6.262008 7.127783 0.854378 0.564118 0.803984