Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00198 ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTTCCCAAATGCGATATATGCCAAGACAAGCCGGCTTTCATTTTCTGCGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCCTCTGACAAGCAGAAAGAAGATCTAGAGTTCGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCACGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCATTCGCATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA 714 47.34 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEHVPQEALAAAEVPELPTSHSGSAFAYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1172012 1174978 + CmoCh08G001980.1 Cmo08g00198 386931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00198 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cmo08g00198 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cmo08g00198 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cmo08g00198 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Cmo08g00198 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cmo08g00198 237 Gene3D Classic Zinc Finger 1 95 - -
Cmo08g00198 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo08g00198 237 CDD Bbox1_BBX-like 5 47 - -
Cmo08g00198 237 CDD Bbox1_BBX-like 56 98 - -
Cmo08g00198 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cmo08g00198 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00198 - - - csv:101215327 446.047
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo08g00198 Cmo17g00588 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00707 Cmo-Chr4:3508231 Cmo08g00198 Cmo-Chr8:1172012 6.89E-45 dispersed
Cmo08g00198 Cmo-Chr8:1172012 Cmo16g00458 Cmo-Chr16:2198493 9.39E-09 dispersed
Cmo17g00588 Cmo-Chr17:6236889 Cmo08g00198 Cmo-Chr8:1172012 4.72E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1241 Blo01g00195 . Bda03g00975 . Bpe04g00902 . . . Cmo08g00198 Cmo17g00588 . . . . . . . . . . . . . . Cla06g00088 Cam06g0132 . . Clacu06g0097 Cmu06g0095 Cre06g0866 . . Cone18ag0848 . . . . . . Blo07g00112 . . Bpe05g00975 . . Bma06g01437 . . . . Cma17g00607 Car08g00177 Car17g00573 . Cpe17g01088 . . . . . . . . . . . . . . . . . Cme11g02456
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo10g00007 CST 1 384 Orphan Transcription Factor Family AT5G61850 67.0 3.1e-122 436.0
Cmo11g00003 CST 1 382 Orphan Transcription Factor Family AT5G61850 67.2 2.6e-121 433.0
Cmo17g00588 CST 1 167 Orphan Transcription Factor Family AT1G06040 67.8 4.1e-60 228.4
Cmo08g00198 CST 1 161 Orphan Transcription Factor Family AT1G06040 69.0 9.1e-60 227.3
Cmo04g00707 CST 1 109 Orphan Transcription Factor Family AT1G06040 68.8 8.9e-39 157.5
Cmo16g00458 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10216 PF00643 zf-B_box 1.50E-08 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00198 Cmo_Chr08 FPKM 1.005312 1.650004 2.918626 1.904903 0.0 0.0 0.0 0.0 0.0 0.0