Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00198 ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTTCCCAAATGCGATATATGCCAAGACAAGCCGGCTTTCATTTTCTGCGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCCTCTGACAAGCAGAAAGAAGATCTAGAGTTCGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCACGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCATTCGCATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA 714 47.34 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEHVPQEALAAAEVPELPTSHSGSAFAYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1172012 1174978 + CmoCh08G001980.1 Cmo08g00198 386931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00198 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cmo08g00198 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cmo08g00198 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Cmo08g00198 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Cmo08g00198 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cmo08g00198 237 Gene3D Classic Zinc Finger 1 95 - -
Cmo08g00198 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo08g00198 237 CDD Bbox1_BBX-like 5 47 - -
Cmo08g00198 237 CDD Bbox1_BBX-like 56 98 - -
Cmo08g00198 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cmo08g00198 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00198 Cmo17g00588 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00707 Cmo-Chr4:3508231 Cmo08g00198 Cmo-Chr8:1172012 6.89E-45 dispersed
Cmo08g00198 Cmo-Chr8:1172012 Cmo16g00458 Cmo-Chr16:2198493 9.39E-09 dispersed
Cmo17g00588 Cmo-Chr17:6236889 Cmo08g00198 Cmo-Chr8:1172012 4.72E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10216 PF00643 zf-B_box 1.50E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00198 - - csv:101215327 446.047