Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00205 ATGGGGCATAGTTCGAAGAAGAAGCGGCGTGGTGGGGGAGGGGGTGGGAAGAGAAGCAAGGGAAGGACGCCACAGAAAGATCATTCGTTCAGTGGCGAAGAGAGCGAGCTTATCTCAGAAGAGCTCACTGCATTGTGTGGGATATTTCAAGAAGACTGCAAAGTTGTCTCTGGCCCATCTCCTCAAGTTACCATCAAGCTTAGGCCATATTCAAATGACATGGGGTTTGAGGATCTAGATGTATCTGCTTTTCTTTCGGTGAAATACTTGCCAGGATACCCATACAAATGTCCAAAGTTGCTTATAACCCCGGAGAAAGGTTTAGCAAAAGGTGACACTGAAAAGTTGCTTTCTCTACTTCATGAACAGGCGAGTTATAACGCTCGAGATGGAAGGATAATGATTTTCAATTTGGCCGAGGCTGCTCAGGAGTTCTTGTCAGAAATAGTAACTATAGGACAATCAAATGAATCAGTTGGCTCTTCTAATACAGATAACAATTCTCAATTGCTTCCAGACAAAGTAACTTCAAATGAGAAAGGACCTTATGTTCATGGCTATATAGACCTCTTCAGTGGTTCTGGGGAGTTGTGGAGCTGGAGCTTTGACATGGATGAGAAGCCCTATTCCCAAGCCCAACCTCTTGCTGATAGCTTGAAACTAGGAACTGTCCAAGAAAAGAACCTTGATAAAGTTCAAAACTTATTGACTAAGCAAAATTCAAAGCGAGGTGAATTATTGTCTCCTTCCTTTAACCTAGGTACCCTCGAGGAAGAAAGTGAAGATGAGAGTCATAGCATAACTTCATCTCATTCAAGAAGATCCTTAATTGTACAGAAGGCGGGAGATGTTACTGAAGATGAGAAGCAGGATTCTATTATTGTAGACCATGCTGCTGAAGATGATGACCATGGATCTGAAAGTGAGCCTTCAGAGTGGTCCTTTGCTTCCATGAGTAAGGAACAAGAGTCCCAAACTACTGATAGGGATATAATGATGGTTCATCTGCTCCATCTTGCATGTGCCCCTAAAGGACCATTGGCTGATGCTCTGCCAAAATTGGCGTCTGAACTTTACAACTCAGGGATCCTGTCAAAAGTGGCTCTGGATTTAGCCTCTAAACCGTCTTCCATGTTCCATAAAAAATTTGAGTCTGCTTTCCAGGAAGAGATGAATGCTACTAGTTTCTCCGAGTTTTGGAATCCCTCTGATTTTGGTGGGCCAACATCTTCTCAACTGAGTTCTCGATATCTTAATGATTTTGAGGAGCTAAAGCCCCTTGGTCATGGTGGTTTTGGACATGTAGTATTATGCAAAAACAAACTAGATGGACGACAATATGCTGTGAAAAAAATTCGCCTCAAGGACAAAATATTGCCTGTCGATGACCGCATCCTAAGGGAGGTGGCCACTCTTTCCCGTTTGCAACATCAACATGTTGTTCGATATTATCAGGCGTGGTCTGAAGCTGGTGTTTCTGATTCCTATGGAGAGGCCGCTTGGGGTTCCACGACTCCATTGAGTTCTACTTTCAGCTATAAAGGTGCAAGTGCAACAGATACACTGGATCATGAGAATAAGCTGGAATCAACATATCTCTATATCCAAATGGAATATTGTCCCAGGACTCTTCGTCAGGATTTTGAATCATATACACATTTTGATAAAGAATTGGCATGGCATTTATTCCATCAAATAGTGGAAGGTCTGGCACATATACATGGACAAGGGATCATTCATCGGGATTTAACTCCAAGTAACATTTTCTTTGATGCCCGTAATGATATCAAAATCGGGGATTTTGGTCTTGCTAAGTTCTTAAAGCTGGAGCAATTAGATCAGGATGTAGGCGTTCCTCTAGATACAACTGGAGTTTCAATTGATGGTACTGGTCAAGTTGGGACCTACTTTTACACAGCACCTGAAATTGAACAAGGATGGCCAAAGATTGATGAAAAAGCTGATATGTACAGCTTAGGGATTGTGTTTTTTGAACTTTGGCACCCTTTTGGTACTGCGATGGAGAGGCACCTTGTTCTATCTGATTTGAAGCAGAAAGGAGAGCTTCCAACCACTTGGGTTGCTGAATTTCCTGAACAAGCATCCTTGTTACGACGTTTAATGTCGCAGAGTCCATCTGAGCGTCCTTCAGCCTTGGAACTCCTCCAGCATGCCTTTCCTCCAAGAATGGAGTATCAGTTGTTAGACAATATTCTACGAACAATGAAAACATCTGAGGACTCGAGTATATATGATAGAGTTGTTAATGCTATCTTCAGTGAAGAGACATTAGCGATAAAAGATGACCAACTTGATTGTGGTACTGCCTCTATCCAGTACACAGATTTGGGCACTGAGGTTCGGGATCATGTTATTGACGTCACAAGGGAGTTGTTCAGGCTGCATTGTGCAAAGCATTTGGAAATAAGTCCCATGCATTTGTTAGATGGGTCTGCGCAAATCAATAGGAACACGGTCAAACTTTTGAGCCATGGTGGAGATATACTTGAGCTCTGTCATGAGCTGCGTTTACCTTTTCTTAATTGGCTCGTCTCCAGTCAGGGTGATTTTGATATCATTGGAGGTACATCGGCTTTGACTGAGGCAGAGGTTATCAAGGTGACTGTAGACGTTATTTCATATTTTTTTCATTCAGAATCTTGTGACATACACTTAAATCATGGAGATCTGTTGAATGCTATTTGGTCTTGGGTTGGTGTTAAGGCAGAACAAAGACATAAAGTGGCGGAGCTTCTCTCTATGATGGTATCCTTACGTCCTCAGTCTTCTGAGAGGAAATCAAAATGGGTTGTGATAAGGCGCCAACTGTTGCAGGAACTCAAATTAGCACAAGCTGTTGTAAATAGATTGCAGACTGTAGTTTTTAGGTTCTGTGGTGCAGTGGATCAGGCAGTTCCTAGATTGAGGGGAGCACTTCCAACAGACAAACCAATGCGTAGAGCACTTGTTGAGTTGTTAGACCTTTTCAACTACTTGAAAGTGTGGAGGCTTGAAGCAAATGTTTACATAGATGCCTTAATGTCACCAACGGAGGATTACCATCGAGATATTTTTTTTCAGGTATACTTAACAAAGGAAAATCATCCTGGTTCACATCCTGAAGGTACACTGGTTGCTATTGGTGGCCGCTATGACTATTTGCTGCAGCAAATGTGGAGCCGAGCATATAAAACTACCCCTCCGGGTGGCGTCGGGACCAGCATTGCATTAGAGACTATGATTCAGCAAGCTGCTTTAGATTTGAAACCCATCCGACATGAGGGGAGCACCAGTTTCCTGGTTTGTTCGCGAGGAGGAGGTGGATTATTGTTAGAACGCATGGAGCTTGTTGTGGAGCTATGGGAGGAGAAGATTAAGGCTCAGCTTGTCCCTACACCTGATCCAAGCTTCACGGAGCAATATGAATATGCTAACGAGCATGACATAAAATGTCTTGTTATTATCACAGACTGTGGTGTATCAAATAAGGGTTCAGTAAGGGTTCGACATCTAGAACTCAAAAGGGAGAAAGAAGTTGAACGCACATCCATTGTCAAGTTTCTCCAGGAGGCAATGGCAAATCAGTTTAAAAACCCCCTCATTTGGAATTAG 3612 42.77 MGHSSKKKRRGGGGGGKRSKGRTPQKDHSFSGEESELISEELTALCGIFQEDCKVVSGPSPQVTIKLRPYSNDMGFEDLDVSAFLSVKYLPGYPYKCPKLLITPEKGLAKGDTEKLLSLLHEQASYNARDGRIMIFNLAEAAQEFLSEIVTIGQSNESVGSSNTDNNSQLLPDKVTSNEKGPYVHGYIDLFSGSGELWSWSFDMDEKPYSQAQPLADSLKLGTVQEKNLDKVQNLLTKQNSKRGELLSPSFNLGTLEEESEDESHSITSSHSRRSLIVQKAGDVTEDEKQDSIIVDHAAEDDDHGSESEPSEWSFASMSKEQESQTTDRDIMMVHLLHLACAPKGPLADALPKLASELYNSGILSKVALDLASKPSSMFHKKFESAFQEEMNATSFSEFWNPSDFGGPTSSQLSSRYLNDFEELKPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKILPVDDRILREVATLSRLQHQHVVRYYQAWSEAGVSDSYGEAAWGSTTPLSSTFSYKGASATDTLDHENKLESTYLYIQMEYCPRTLRQDFESYTHFDKELAWHLFHQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGVPLDTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFGTAMERHLVLSDLKQKGELPTTWVAEFPEQASLLRRLMSQSPSERPSALELLQHAFPPRMEYQLLDNILRTMKTSEDSSIYDRVVNAIFSEETLAIKDDQLDCGTASIQYTDLGTEVRDHVIDVTRELFRLHCAKHLEISPMHLLDGSAQINRNTVKLLSHGGDILELCHELRLPFLNWLVSSQGDFDIIGGTSALTEAEVIKVTVDVISYFFHSESCDIHLNHGDLLNAIWSWVGVKAEQRHKVAELLSMMVSLRPQSSERKSKWVVIRRQLLQELKLAQAVVNRLQTVVFRFCGAVDQAVPRLRGALPTDKPMRRALVELLDLFNYLKVWRLEANVYIDALMSPTEDYHRDIFFQVYLTKENHPGSHPEGTLVAIGGRYDYLLQQMWSRAYKTTPPGGVGTSIALETMIQQAALDLKPIRHEGSTSFLVCSRGGGGLLLERMELVVELWEEKIKAQLVPTPDPSFTEQYEYANEHDIKCLVIITDCGVSNKGSVRVRHLELKREKEVERTSIVKFLQEAMANQFKNPLIWN 1203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1194889 1217333 - CmoCh08G002050.1 Cmo08g00205 386938

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00205 1203 ProSitePatterns Tyrosine protein kinases specific active-site signature. 578 590 IPR008266 GO:0004672|GO:0006468
Cmo08g00205 1203 PANTHER HISTIDYL-TRNA SYNTHETASE 36 1203 - -
Cmo08g00205 1203 SUPERFAMILY Class II aaRS and biotin synthetases 780 1082 IPR045864 -
Cmo08g00205 1203 ProSitePatterns Protein kinases ATP-binding region signature. 427 451 IPR017441 GO:0005524
Cmo08g00205 1203 SUPERFAMILY Protein kinase-like (PK-like) 417 748 IPR011009 -
Cmo08g00205 1203 SUPERFAMILY UBC-like 34 146 IPR016135 -
Cmo08g00205 1203 PANTHER EIF-2-ALPHA KINASE GCN2 36 1203 - -
Cmo08g00205 1203 Gene3D Bira Bifunctional Protein; Domain 2 777 853 IPR045864 -
Cmo08g00205 1203 MobiDBLite consensus disorder prediction 1 35 - -
Cmo08g00205 1203 CDD STKc_EIF2AK4_GCN2_rpt2 414 725 - -
Cmo08g00205 1203 Pfam RWD domain 37 146 IPR006575 GO:0005515
Cmo08g00205 1203 ProSiteProfiles Protein kinase domain profile. 421 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00205 1203 SUPERFAMILY Class II aaRS ABD-related 1103 1194 - -
Cmo08g00205 1203 Gene3D Bira Bifunctional Protein; Domain 2 854 1087 IPR045864 -
Cmo08g00205 1203 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Cmo08g00205 1203 Coils Coil 940 960 - -
Cmo08g00205 1203 Pfam Protein kinase domain 421 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00205 1203 Gene3D Transferase(Phosphotransferase) domain 1 542 735 - -
Cmo08g00205 1203 SMART RWD2001b 40 149 IPR006575 GO:0005515
Cmo08g00205 1203 MobiDBLite consensus disorder prediction 299 326 - -
Cmo08g00205 1203 Pfam Anticodon binding domain of tRNAs 1100 1195 IPR024435 -
Cmo08g00205 1203 Gene3D - 1095 1194 IPR036621 -
Cmo08g00205 1203 Gene3D Ubiquitin Conjugating Enzyme 28 157 IPR016135 -
Cmo08g00205 1203 Gene3D Phosphorylase Kinase; domain 1 409 539 - -
Cmo08g00205 1203 MobiDBLite consensus disorder prediction 20 35 - -
Cmo08g00205 1203 MobiDBLite consensus disorder prediction 246 275 - -
Cmo08g00205 1203 MobiDBLite consensus disorder prediction 1 16 - -
Cmo08g00205 1203 Pfam Histidyl-tRNA synthetase 859 1078 IPR041715 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00205 K16196 EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1] - csv:101207000 2051.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00205 Cmo-Chr8:1194889 Cmo03g00095 Cmo-Chr3:1333030 8.76E-24 dispersed
Cmo08g00205 Cmo-Chr8:1194889 Cmo02g01346 Cmo-Chr2:8023702 2.25E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1210 Blo01g00199 . . Bda08g00153 . . . Bma05g01170 Cmo08g00205 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0565 . . . . . . . . . . . . . . . . . . . . Car08g00179 . . Cpe17g01092 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006684 2 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74515 PF00069 Pkinase 4.70E-50 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00205 Cmo_Chr08 FPKM 10.773157 13.124801 14.900307 14.349021 13.064356 12.222191 12.710948 15.59111 14.895391 14.035277