Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00210 ATGCTTCCTGTTTTTGGTGAAAATTTTGATCAGACTGCCTTGATTGTTGTGAAGCCTGCGATATCTTTCGTTTTGGGCCAACACCAGGCAAGAGCGAGGCGAAACGAGCTGAGAAGCATTCACCGGAAATTTGATCAATCCCATCTAGCTCTTCTATCGCCCATGTATCCAAAGCAAACTGGTTTAGGGGATGGACCAGTCTCCAGCCCACTACGAACAAGTGCTCGACCAAGAAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTCCTTCTGCATCTTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAATCCTTGCCAACTACGAATGCTGTCGTGAGAACAGAACTATATCCTCCAGTTGAAAATTTGCGGCGTTCTCAACGACAGAAGAGGGGGCGTCCAAATTTTAGCCGTTACAGTGATTCTGAAGACGAGGATTTAATGAGTCCCAAGTATAAAACGTCGAGGAGTCGGAGGATTAGTAACTCAAATAAAAATGTTTTTTCTTCTCCAAAGCATACGAAAAACAAGGAGAACAGACCTACTCCTAGGCGTGAGGGATTACGACCACGTCATTCTCGACTAATTTCTAGAGAGCGTTTGAATTCAGAATCAGATGATGAGCAAGGTAGCTCAGAAGATAAAGCGAGCCAAGATGAGATTGAAAATGGGAATGATATAGAGGATAATGATGTGGAAGATATTCAAAATGATGATGACGGTGATCCTGAACCTGAAGATGAGGGTGAGGAAGATGGTGATGATGAAGGAGGTGAAGAAGAACAGGAGGTACGAAGGCGATATGATCTTCGAAATCGTCCCGATGCTCGGAGACTCTCTATTGGAGAAGGTAAACCAAGACCAACATCTCCTCGTAGAGTGTTACATCAAGGAATGGGCACCAAGGTTGGGAGAGATGTAAGGAGGGGTGGATCAAGAGTTCATAAACGTCGTATGTCAAGGATTGAAGATTCCGACGATTCTCTTCTTGTGGATGAGCTGGATCAAGCACCTGGTATACCATGGGCTCGAGGTGGAAGTAGATCTGGCCCACCTTGGCTGTTTGGAGGATTGGACATGCATGGGACTGCGTCTTGGGGATTGAATATTGCTGCATCTGGTTGGGGTCATCAAAGTGATGCATTTTCAAGTTTATCATCTGGTATTCAAACTGCTGGACCAAGCTCTAAAGGTGGGGCTGATATTCAACCTGTACAAGTTGATGAAAATGTTAGCTTTGATGACATTGGTGGCTTGTCAGGATATATTGATGCTTTGAAGGAGATGGTATTCTTTCCTTTACTCTACCCTGATTTCTTCGCAAGTTATCATATAACTCCACCGAGAGGAGTGCTGTTGTGTGGGCCTCCAGGCACTGGGAAAACATTAATTGCTAGAGCATTAGCATGTGCTGCATCAAAGGCCGGCCAAAAGGTCAGTTTCTACATGCGGAAGGGTGCTGATGTTCTAAGCAAGTGGGTTGGTGAGGCTGAGCGACAACTGAAACTACTTTTTGAAGAAGCACAGAGGAATCAACCTTCTATCATATTCTTTGATGAAATTGATGGGCTTGCTCCTGTTAGATCTAGCAAACAGGAGCAGATTCATAATTCCATCGTTTCCACTTTGCTTGCTTTGATGGATGGGTTAGACTCTCGTGGGCAGGTTGTATTAATTGGAGCTACTAATCGGATAGATGCTATCGATGGAGCCCTACGCCGCCCTGGTCGTTTTGATCGTGAATTTAACTTTCCACTGCCTGGTTGTGATGCGCGTGCTGAGATATTGGCCATTCACACGCGCAAGTGGAAGAATCCTCCTTCGGAGGAGCTTCGATCTGAACTTGCTGCTACTTGTGTAGGTTATTGTGGTGCTGATTTGAAGGCTCTCTGCACTGAAGCTGCTATTCAAGCTTTCCGCCAAAAGTATCCTCAGGTTTATACTAGCGATGACAAGTTTCTAATAGATGTTGAGTCAGTCAAGGTTGAAAAGTATCATTTTGTTGAAGCCATGTCCACAATCACTCCTGCTGCTCATCGAGGTGCTGTAGTGCATTCTCGGCCGCTGTCTTCTGTAGTTGCGCCATGTTTGCAACGACACCTTCATAAAGCCATGAATATCCTATCTGATGCCTTTCCATTAGCAGCATCGTCAGAGTTTGCCAAACTTTCCATGCTTTCTTTTGGATCCGCAATTCCGCTAGTTTTTAGACCTCGTCTTTTGCTTTGCGGTGGTGAAGGCGTTGGGTTGGATCACCTTGGTCCTGCAATTTTGCATGAATTGGAGAAATTCCCTGTTCATTCTTTGGGACTTCCGTCACTGCTTTCTGATCCTAGTGCAAAGACACCTGAGGAAGCGTTGGTACATATATTTGGTGAAGCAAGAAGGACTACTCCATCAATACTCTACCTACCTCAATTTCATTGTTGGTGGGAGACGGCAGATGAGCAATTGAGAGCTGTTTTATTGACTCTTTTAGAGGAGCTACCTTCTGACTTACCCATATTACTGCTTGGAACATCTTTAGTTTCACTTGCTGAAGTTGATGAGAAAGCTTCTATGATTTTTCCTGATCGCGTAATCTATCAAGTCAGTCCTCCGTCCAGTGAAGATAAGTCTCTGTTTTTTACCCATTTAATTGAGGCTGCTTCCTCAGTTTTGCTGGAGGGCATGCAGAAAAAAGTGCAAGTGTCAGGATCCCTTCCTGAACTTCCCAAGGCTCCAGTAGTAGCCAGTGGACCAAAGGCTTCTGAGTTAAGGGCCAAGGTAGAAGCTGAACAGCATGCCCTTCGACGATTACGCATGTGCCTTAGAGATGTTTGCAACAGGATTTTATATGATAAAAGGTTTACTGTCTTCCATTACCCTGTTCTGGATGAGGAAGCTCCCAATTACCGCTCAGTGGTCCAGAACCCAATGGACATGGCTACATTACTTCAACACGTTGACGCTGGGCAGTATATTACTTGTTCAGCATTTGTCCAAGATGTAGATCTTATTGTTTCTAATGCAAAGGCTTATAATGGAAATGACTACAATGGTGCTCGGATTGTTAGCAGAGCTTACGAGCTTCGAGATGCAGTGCATGGAATGCTGACGCAGATGGATCCGGCGCTGATTGCATTCTGTGACAAGATAGCTGCCCAAGGTGGTCCTCTGAACATGCCCGAAGAACTTGGTGGAACTATGTTTCCATCTACCCCAGTTGTGCAGCTGGGAACTGCTACTCGAGCTAGTGCTCGATTGCGTAATGTCCACCCAGACCTTGATTTCAATCGAAGTTATGAGGCATTAAAACGCCCAAAGAAGAATGTGGATGCTGCTCATCATGCAGCTTTACAAACAGAAGAGAAACCACCACTGCGTCAAGATTCAGTTGTGCCAAAGCCATCTCCCGATATCGAAATGAATGAAGTGAGTCATGAAAGTTCAAAAACCTGTCCGGATGGTGGGAATCAGTGTGAAGGTTCTGGTAGAGAGGTCCCCGATTTCACAGATTGGAATGGTTCACAAGATGCTGCTGGGGTATCGGATGGGTATATCGCGAGGCAAGTCGAGTCGGTGAAGAACGTGCTTGTGGAGCGGAGTGGGAAGTACGGAATTCCACAGCTTGAAAGACTATATACTCGGATAATGAAAGCTGTGTTCAAGATTAAAGATAAAGAAGAAGAAGAAGGCATGGATGATCCGAAGCATTCAATTTTGAAGTTTTTATTGAAATTTGCAGAGGATGAATCTAATTTCTGA 3792 44.83 MLPVFGENFDQTALIVVKPAISFVLGQHQARARRNELRSIHRKFDQSHLALLSPMYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGPSASFKPNKKRTPATRIAKMLRPKKQSLPTTNAVVRTELYPPVENLRRSQRQKRGRPNFSRYSDSEDEDLMSPKYKTSRSRRISNSNKNVFSSPKHTKNKENRPTPRREGLRPRHSRLISRERLNSESDDEQGSSEDKASQDEIENGNDIEDNDVEDIQNDDDGDPEPEDEGEEDGDDEGGEEEQEVRRRYDLRNRPDARRLSIGEGKPRPTSPRRVLHQGMGTKVGRDVRRGGSRVHKRRMSRIEDSDDSLLVDELDQAPGIPWARGGSRSGPPWLFGGLDMHGTASWGLNIAASGWGHQSDAFSSLSSGIQTAGPSSKGGADIQPVQVDENVSFDDIGGLSGYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILAIHTRKWKNPPSEELRSELAATCVGYCGADLKALCTEAAIQAFRQKYPQVYTSDDKFLIDVESVKVEKYHFVEAMSTITPAAHRGAVVHSRPLSSVVAPCLQRHLHKAMNILSDAFPLAASSEFAKLSMLSFGSAIPLVFRPRLLLCGGEGVGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHCWWETADEQLRAVLLTLLEELPSDLPILLLGTSLVSLAEVDEKASMIFPDRVIYQVSPPSSEDKSLFFTHLIEAASSVLLEGMQKKVQVSGSLPELPKAPVVASGPKASELRAKVEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVLDEEAPNYRSVVQNPMDMATLLQHVDAGQYITCSAFVQDVDLIVSNAKAYNGNDYNGARIVSRAYELRDAVHGMLTQMDPALIAFCDKIAAQGGPLNMPEELGGTMFPSTPVVQLGTATRASARLRNVHPDLDFNRSYEALKRPKKNVDAAHHAALQTEEKPPLRQDSVVPKPSPDIEMNEVSHESSKTCPDGGNQCEGSGREVPDFTDWNGSQDAAGVSDGYIARQVESVKNVLVERSGKYGIPQLERLYTRIMKAVFKIKDKEEEEGMDDPKHSILKFLLKFAEDESNF 1263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1239724 1248792 + CmoCh08G002100.1 Cmo08g00210 386943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00210 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 750 898 IPR027417 -
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 275 297 - -
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 238 274 - -
Cmo08g00210 1263 SUPERFAMILY Bromodomain 928 1054 IPR036427 GO:0005515
Cmo08g00210 1263 PANTHER BNAC08G44480D PROTEIN 55 1258 - -
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 112 313 - -
Cmo08g00210 1263 PANTHER AAA DOMAIN-CONTAINING 55 1258 IPR045199 -
Cmo08g00210 1263 CDD Bromo_AAA 945 1055 - -
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 169 185 - -
Cmo08g00210 1263 Gene3D - 602 687 - -
Cmo08g00210 1263 SMART AAA_5 462 603 IPR003593 -
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 57 86 - -
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 186 237 - -
Cmo08g00210 1263 Pfam Bromodomain 959 1026 IPR001487 GO:0005515
Cmo08g00210 1263 SMART bromo_6 945 1052 IPR001487 GO:0005515
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 1127 1171 - -
Cmo08g00210 1263 Gene3D - 424 694 IPR027417 -
Cmo08g00210 1263 ProSitePatterns AAA-protein family signature. 571 589 IPR003960 GO:0005524|GO:0016887
Cmo08g00210 1263 Gene3D - 937 1065 IPR036427 GO:0005515
Cmo08g00210 1263 Pfam AAA+ lid domain 628 665 IPR041569 -
Cmo08g00210 1263 ProSiteProfiles Bromodomain profile. 968 1030 IPR001487 GO:0005515
Cmo08g00210 1263 MobiDBLite consensus disorder prediction 139 168 - -
Cmo08g00210 1263 PRINTS Bromodomain signature 993 1011 IPR001487 GO:0005515
Cmo08g00210 1263 PRINTS Bromodomain signature 977 993 IPR001487 GO:0005515
Cmo08g00210 1263 PRINTS Bromodomain signature 1011 1030 IPR001487 GO:0005515
Cmo08g00210 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 689 IPR027417 -
Cmo08g00210 1263 Pfam ATPase family associated with various cellular activities (AAA) 466 601 IPR003959 GO:0005524|GO:0016887
Cmo08g00210 1263 CDD AAA 462 601 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00210 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - csv:101203476 1998.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00210 Cmo-Chr8:1239724 Cmo16g00439 Cmo-Chr16:2089973 3.57E-81 dispersed
Cmo08g00210 Cmo-Chr8:1239724 Cmo06g00381 Cmo-Chr6:1853732 3.76E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00210 Cmo_Chr08 FPKM 6.396175 9.492708 10.114281 8.373133 3.837016 4.402733 7.318612 11.477131 14.961851 15.307739