Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00213 ATGGATTCTGAGGACGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGCGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCATACATGTGGAATTTGTTTTGAGTCCCATCCTGTAAGTAGGATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGCGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTCAAGACATGGTTAATTCATTGGCCTCAAATGAAGATAGGGAGAAGTATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGGAACTATGATGTATCTTGCTTCTGTTCGTATGGCTTTTGCTGGAATTGCACTGAAGAAGCTCACCGTCCTGTAGATTGTGCTACCGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGCAGTCACAGGAGAAAAAGCTTCAAGAAATAATTGACTTGTTTTCTGGAAACCTAACTTTGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTGCAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCCTATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGTTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAGCAAAGCAGGGAGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCGGTTCGACCAGAAGCGACGACAATGCAACTCATTGGTCATGTGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA 1593 45.39 MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREHTCGICFESHPVSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGQDMVNSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWQSQEKKLQEIIDLFSGNLTLILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALADLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSSKAGRSGRAKGGIIRTSGSTRSDDNATHWSCEHCTYVNARSATICEMCHQRH 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1264553 1271630 - CmoCh08G002130.1 Cmo08g00213 386946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00213 530 SUPERFAMILY RING/U-box 224 287 - -
Cmo08g00213 530 Coils Coil 198 218 - -
Cmo08g00213 530 Pfam Ariadne domain 296 458 IPR045840 -
Cmo08g00213 530 Gene3D - 185 460 - -
Cmo08g00213 530 Coils Coil 295 315 - -
Cmo08g00213 530 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 220 476 IPR031127 GO:0004842|GO:0016567
Cmo08g00213 530 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 53 209 IPR031127 GO:0004842|GO:0016567
Cmo08g00213 530 SUPERFAMILY RING/U-box 54 136 - -
Cmo08g00213 530 CDD RING-HC_RBR_TRIAD1_like 58 108 - -
Cmo08g00213 530 MobiDBLite consensus disorder prediction 460 503 - -
Cmo08g00213 530 SUPERFAMILY RING/U-box 127 196 - -
Cmo08g00213 530 SMART ibrneu5 127 189 IPR002867 -
Cmo08g00213 530 SMART ibrneu5 217 283 IPR002867 -
Cmo08g00213 530 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 220 476 - -
Cmo08g00213 530 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 53 209 - -
Cmo08g00213 530 MobiDBLite consensus disorder prediction 460 481 - -
Cmo08g00213 530 SMART zf_4 505 529 IPR001876 -
Cmo08g00213 530 Pfam IBR domain, a half RING-finger domain 127 189 IPR002867 -
Cmo08g00213 530 Pfam IBR domain, a half RING-finger domain 232 274 IPR002867 -
Cmo08g00213 530 SUPERFAMILY Ran binding protein zinc finger-like 502 528 IPR036443 -
Cmo08g00213 530 Gene3D - 500 530 - -
Cmo08g00213 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Cmo08g00213 530 ProSiteProfiles TRIAD supradomain profile. 54 287 IPR044066 -
Cmo08g00213 530 ProSitePatterns Zinc finger RanBP2-type signature. 507 526 IPR001876 -
Cmo08g00213 530 ProSiteProfiles Zinc finger RING-type profile. 58 105 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00213 Cmo17g00577 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00213 Cmo-Chr8:1264553 Cmo20g00877 Cmo-Chr20:4428968 5.15E-51 dispersed
Cmo12g01003 Cmo-Chr12:9353963 Cmo08g00213 Cmo-Chr8:1264553 0 transposed
Cmo19g00236 Cmo-Chr19:1649353 Cmo08g00213 Cmo-Chr8:1264553 2.83E-17 transposed
Cmo17g00577 Cmo-Chr17:5927996 Cmo08g00213 Cmo-Chr8:1264553 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00213 K11968 - csv:101223037 872.848