Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00213 | ATGGATTCTGAGGACGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGCGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCATACATGTGGAATTTGTTTTGAGTCCCATCCTGTAAGTAGGATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGCGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTCAAGACATGGTTAATTCATTGGCCTCAAATGAAGATAGGGAGAAGTATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGGAACTATGATGTATCTTGCTTCTGTTCGTATGGCTTTTGCTGGAATTGCACTGAAGAAGCTCACCGTCCTGTAGATTGTGCTACCGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGCAGTCACAGGAGAAAAAGCTTCAAGAAATAATTGACTTGTTTTCTGGAAACCTAACTTTGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTGCAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCCTATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGTTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAGCAAAGCAGGGAGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCGGTTCGACCAGAAGCGACGACAATGCAACTCATTGGTCATGTGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA | 1593 | 45.39 | MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREHTCGICFESHPVSRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGQDMVNSLASNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWQSQEKKLQEIIDLFSGNLTLILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALADLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSSKAGRSGRAKGGIIRTSGSTRSDDNATHWSCEHCTYVNARSATICEMCHQRH | 530 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1264553 | 1271630 | - | CmoCh08G002130.1 | Cmo08g00213 | 386946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00213 | 530 | SUPERFAMILY | RING/U-box | 224 | 287 | - | - | |
Cmo08g00213 | 530 | Coils | Coil | 198 | 218 | - | - | |
Cmo08g00213 | 530 | Pfam | Ariadne domain | 296 | 458 | IPR045840 | - | |
Cmo08g00213 | 530 | Gene3D | - | 185 | 460 | - | - | |
Cmo08g00213 | 530 | Coils | Coil | 295 | 315 | - | - | |
Cmo08g00213 | 530 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 220 | 476 | IPR031127 | GO:0004842|GO:0016567 | |
Cmo08g00213 | 530 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 53 | 209 | IPR031127 | GO:0004842|GO:0016567 | |
Cmo08g00213 | 530 | SUPERFAMILY | RING/U-box | 54 | 136 | - | - | |
Cmo08g00213 | 530 | CDD | RING-HC_RBR_TRIAD1_like | 58 | 108 | - | - | |
Cmo08g00213 | 530 | MobiDBLite | consensus disorder prediction | 460 | 503 | - | - | |
Cmo08g00213 | 530 | SUPERFAMILY | RING/U-box | 127 | 196 | - | - | |
Cmo08g00213 | 530 | SMART | ibrneu5 | 127 | 189 | IPR002867 | - | |
Cmo08g00213 | 530 | SMART | ibrneu5 | 217 | 283 | IPR002867 | - | |
Cmo08g00213 | 530 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 220 | 476 | - | - | |
Cmo08g00213 | 530 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 53 | 209 | - | - | |
Cmo08g00213 | 530 | MobiDBLite | consensus disorder prediction | 460 | 481 | - | - | |
Cmo08g00213 | 530 | SMART | zf_4 | 505 | 529 | IPR001876 | - | |
Cmo08g00213 | 530 | Pfam | IBR domain, a half RING-finger domain | 127 | 189 | IPR002867 | - | |
Cmo08g00213 | 530 | Pfam | IBR domain, a half RING-finger domain | 232 | 274 | IPR002867 | - | |
Cmo08g00213 | 530 | SUPERFAMILY | Ran binding protein zinc finger-like | 502 | 528 | IPR036443 | - | |
Cmo08g00213 | 530 | Gene3D | - | 500 | 530 | - | - | |
Cmo08g00213 | 530 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 141 | IPR013083 | - | |
Cmo08g00213 | 530 | ProSiteProfiles | TRIAD supradomain profile. | 54 | 287 | IPR044066 | - | |
Cmo08g00213 | 530 | ProSitePatterns | Zinc finger RanBP2-type signature. | 507 | 526 | IPR001876 | - | |
Cmo08g00213 | 530 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 105 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00213 | Cmo17g00577 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00213 | Cmo-Chr8:1264553 | Cmo20g00877 | Cmo-Chr20:4428968 | 5.15E-51 | dispersed | |
Cmo12g01003 | Cmo-Chr12:9353963 | Cmo08g00213 | Cmo-Chr8:1264553 | 0 | transposed | |
Cmo19g00236 | Cmo-Chr19:1649353 | Cmo08g00213 | Cmo-Chr8:1264553 | 2.83E-17 | transposed | |
Cmo17g00577 | Cmo-Chr17:5927996 | Cmo08g00213 | Cmo-Chr8:1264553 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00213 | K11968 | - | csv:101223037 | 872.848 |