Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00214 ATGGACCTGCAGCTCTTGTGGGTTGGCTTCTTTTTGTGCTGTGGGTTTTGGACTCTTGCTTTGAGTGATCAAGATGTTTTCCTAAGCTTATCTTGTGGAGGAACTACCACCTTCACTGACTCCTCCAACATTTCATGGATTCCGGACATCGACTACATCGGCACCGGTAACACGTCAATCATCGACAAAGGCAAGGGTGGATCTTTTTCCACCGGCCATGTTCGGTTCTTCCCCGACACCCGAGCGCGAAAATGTTACAAGCTACCATTGAAAAATGGCTCCTCATCAGTTCTTATCAGAGCTCAGTTTGTGTACAAAAACTATGACAAGCTTGGAAAGCCCCCTGCATTTGCTGTTTCTATTGGGACAGCCATAACTACCAATGTGAACCTTACCTCTCATGACCCTTGGACTGAGGAGTTTGTATGGCCAGTTAACAAAGAAACTGTCTCCTTCTGTTTGCATTCCATTCCTGAGGGTGGAAGTCCCTTAATATCTTCGGTCGAACTCCGACCGCTGCCACGGGGAGCGTACGACGATGGCTTGCTTCCTAATCAGGCTCTTAGAAAGTCGTATCGAATCAACTGTGGTTACACTAATGGATCTCTCAGGTACCCAATCGATCGATACGATCGAATCTGGGACGCGGACGAGAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCTAACTTTGATTCTATACAAGTGAAGGAAGCTCCACCAGCTGTAGTGGTTGAAACAGCTAGAGTTTTGGCAAGAAGAGATGAGCTGAGCTACAACCTTCCAGTTGAAGAACAAGGAGATTACTTCGTGATTTTGTATTTTGGTGGGATTCTTGCAGTTCATCCTTCATTTGATGTGTTGATGAATGGGAAAATTATAGAATCAAATTACACGGTTGAAATGGGAGAGATGAGGGCTTTGTATGTCATTCAAGACCAAATCAAGAGCTTGATTATCACTTTCAAGAGTGTCAAATTCTATCCTCAAGTCAATGCCATTGAGGTGTATCAAATTGTTCATGTTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAGGTGATTCATCAATCTATTGGTTTGAATTTGGGATGGGAAGATGATCCATGCTCTCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTCGTCACATCTCTGGAGCTTTCCGACATCAACTTCAGGTCGATCAGCCCGACGTTCGGCGACATTCTCGACCTCAAAATACTGGATTTGCACAACACTTCACTTACCGGGCAGATAGAAAATTTGGGCAGCCTGACCCATCTTGAAAATTTGAACTTGAGTTACAACAAGCTAACGTCATTTGGGACAGATTTCGAGAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAACAACAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCACTTATTGAATTTGGAGAACAACAGGCTAGAAGGCACCCTTCCATTGGCTTTGAACAAAGGAACTCTGGAAATTAGAACATCAGGCAACCCTTGTCTGTCTTTCTCCACAATGACATGCAATGATGTTTCATCAAACCCAGCCATTGAAACGCCACAAGTCACAGTGGTTCCTGACAGAAAGAAGGATATGAGCAGCCACAATAGCAACAGTCATATGCCAATCACTGTCATTGCTTGTGCAGTTGCAGCAGTTTTGCTAGTCCTCATCACACTCTCTCTTTCATTTCTACTCTACATGAGGAAGCATTCTCAACACACAGCTCAACCCACATACTCAACAAAGGCAGCAATGGAGCTAAGGAATTGGAACGCTGCAAAAGTATTCTCATACAAGGAGATAAAGGCAGCTACAAACAACTTCAAGGAGGTGATTGGCAGAGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCCTGAGGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAAGCCAACTTGGGGCTGATTCCTTTATCAACGAGGTTCATCTCCTGTCTCAAATTCGTCATCAAAATCTCGTTTGTTTGGAAGGATTTTGTAACGAATCGAAACGACAAATACTTGTTTACGAGTATCTACCGGGTGGATCCTTGGCTGATCACATCTATGGCAAGAACAAAAAAAGTGTCTCACTTAGCTGGATTAGAAGACTCAAAGTAGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGAAGTGAACCAAGGATAATCCACCGTGATGTTAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGGCTGTCCAAGCAACTACCACAGCCTGATGCTACTCATGTCACCACTGTTGTCAAGGGCACCGCTGGCTATTTGGATCCCGAGTATTACTCGACTCAACAGTTAACCGAAAAGAGTGACGTTTATAGTTTTGGAGTTGTTTTATTAGAGCTCATTTGTGGACGAGAGCCTTTGAGTCACACTGGAAATCCGGATTCTTTCAACTTGGTGTTATGGGCGAAACCGTACTTGCAAGCGGGTGCGTTCGAGATAGTCGATGAGAGGTTAAGGGGAAGGTTTGATGTTGAAAGCATGAAAAAGGCAGCTGTTATTGCTATAAGTTGTGTAGAGAGAGATGCTTCACTAAGGCCTAATATTGGACAAGTCTTGGATGACCTTAAACAAGCTTATGATGCTCAAATTGCTTATCTTTCTACTTTTGGCCTTTAA 2733 43.51 MDLQLLWVGFFLCCGFWTLALSDQDVFLSLSCGGTTTFTDSSNISWIPDIDYIGTGNTSIIDKGKGGSFSTGHVRFFPDTRARKCYKLPLKNGSSSVLIRAQFVYKNYDKLGKPPAFAVSIGTAITTNVNLTSHDPWTEEFVWPVNKETVSFCLHSIPEGGSPLISSVELRPLPRGAYDDGLLPNQALRKSYRINCGYTNGSLRYPIDRYDRIWDADENFKPFHVSSGFKVEANFDSIQVKEAPPAVVVETARVLARRDELSYNLPVEEQGDYFVILYFGGILAVHPSFDVLMNGKIIESNYTVEMGEMRALYVIQDQIKSLIITFKSVKFYPQVNAIEVYQIVHVPLEASSTTVSALQVIHQSIGLNLGWEDDPCSPRTWDHVGCEGNLVTSLELSDINFRSISPTFGDILDLKILDLHNTSLTGQIENLGSLTHLENLNLSYNKLTSFGTDFENLSNLKILDLQNNSLQGIVPDSLGELEDLHLLNLENNRLEGTLPLALNKGTLEIRTSGNPCLSFSTMTCNDVSSNPAIETPQVTVVPDRKKDMSSHNSNSHMPITVIACAVAAVLLVLITLSLSFLLYMRKHSQHTAQPTYSTKAAMELRNWNAAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPEGKLVAVKVRFDKSQLGADSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGKNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQLPQPDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGNPDSFNLVLWAKPYLQAGAFEIVDERLRGRFDVESMKKAAVIAISCVERDASLRPNIGQVLDDLKQAYDAQIAYLSTFGL 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1277155 1284889 + CmoCh08G002140.1 Cmo08g00214 386947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00214 910 Pfam Malectin-like domain 30 343 IPR024788 -
Cmo08g00214 910 ProSiteProfiles Leucine-rich repeat profile. 436 458 IPR001611 GO:0005515
Cmo08g00214 910 SMART serkin_6 623 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00214 910 Gene3D Phosphorylase Kinase; domain 1 596 698 - -
Cmo08g00214 910 Gene3D - 189 344 - -
Cmo08g00214 910 Gene3D Transferase(Phosphotransferase) domain 1 699 905 - -
Cmo08g00214 910 Pfam Protein kinase domain 626 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00214 910 CDD STKc_IRAK 629 896 - -
Cmo08g00214 910 Gene3D Ribonuclease Inhibitor 355 548 IPR032675 -
Cmo08g00214 910 ProSiteProfiles Protein kinase domain profile. 623 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00214 910 PANTHER OS07G0107800 PROTEIN-RELATED 10 909 - -
Cmo08g00214 910 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515
Cmo08g00214 910 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Cmo08g00214 910 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Cmo08g00214 910 SUPERFAMILY Protein kinase-like (PK-like) 598 894 IPR011009 -
Cmo08g00214 910 SMART LRR_typ_2 457 480 IPR003591 -
Cmo08g00214 910 SMART LRR_typ_2 481 505 IPR003591 -
Cmo08g00214 910 SMART LRR_typ_2 434 456 IPR003591 -
Cmo08g00214 910 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 909 - -
Cmo08g00214 910 SUPERFAMILY L domain-like 371 503 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00255 Cmo-Chr4:1270098 Cmo08g00214 Cmo-Chr8:1277155 9.69E-21 dispersed
Cmo08g00214 Cmo-Chr8:1277155 Cmo14g00177 Cmo-Chr14:803287 2.23E-127 dispersed
Cmo08g00214 Cmo-Chr8:1277155 Cmo04g01903 Cmo-Chr4:9700720 1.21E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74516 PF12819 Malectin_like 1.50E-52 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00214 - - csv:101203637 1546.18