Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00224 ATGGCGCAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCAATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGACAACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCACGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCGGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAAAAACCCAAAAGCCGACAACAGCGCCAAGTTCTGCAGTTCAATTTTGTTTCTGTTTGTTTCTGGATGTTCGATTGAAGGGATTATGGTGAGGGAACAACGAGTTGAATCGTTTTATGCTAAACTTCGTGAATCTGTGACGGCTTCTTCTTTGTCTCCTCTCCTTATTTTTCCTTCCACTTCTGATGTTGACTCGCTCTGTGCCTTGAAAATTATTTTTCAAGTTCTTGAATCTGATTCGATTCGATACGCTTGTTATCCCGTGTCTTCTTTTCAAGAAATTCATAAATATGCTGGTCCTAGTTTGAGTTCGTCGTCTGCCGATCCGATTTCGATCCTTTTGATTAACTGGGGATGTCATCGAGATCTTAGGAAGGTTTTGAGTTTAGGTCCGGCTGCTCATGTGTTTGTTGTTGATAGTCATCGTCCAATTCATCTTCATAATCTGAGCGATCAGAATGAGCAAGTGGTTGTTCTTTACACGAAAGACGATGAGCTCCAGGCTGACTTAGCTTATGATTTCGATGTCTCTGCATTGGCGAATGCGAGCGATTTGAACAGCGATGATGAGATTGATGAGGAATTGGATAGTGACGATGATAACGATAGCGAAAACGAAGAAGAAGATCGAGGCGGATCGAGGAAACGGAGGAGAGTTGATAAGGAAAATGAGGATGATCCTGTTCAGATTTTCAGGAAATTGAAAAGAGGATACTATTATATGGGTACCTTCCATGGTAGGCCTTCAGGGTGTTTGATGTATGATCTGTCTCATTCATTGAGGAAGAACACAAACGAATTACTATGGCTGGCTTGTGTGTCGTTAACTGATCAGTTTGTTCATGAAAGATTAACGGATGAGAGGTACCAAGCTGGGGTTATGGAGCTTGAACAACACATAAACAGTTCAGGGAACTTGAATGCTGTAAACTCTGTTACACTCAAGGATGGCACCAAGATCCGAGCTCCTGAGGCATCAAGAATCACTTATGATGATGAGCCAAGATTAATGCTGTTGCAGGAGTGGAGCTTGTTTGATTCAATGCTGTGTTCTTCATACATTGCTACCAAGTTAAAGACATGGAGTGACAATGGAATGAAGAAGCTGAAATTGCTTCTAGCACGCATGGGGTTTGCACTTGTGGATTGCCAACAAAAGTTCCAATACATGAATCTCGAAGTGAAACGAAAAATGAAGGACGAATTCGAGCGATACCTACCCGAATACGGCCTAAACGATTTCTACTACAGAAGTTTCTTGAGGTTACATGGTTACAGCTCAAAAGTGTCAGCAGCAGATGTGGTATATGGGGTCACTGCATTGCTTGAATCCTTTGTGAAATCAGATGGGTCAAGTGCTTCCAAGAAGTTTGGAGTGGCTTATGATGCATTGTCATTGAGCAATCTTGACAAGCTCAAAGATGGAATGCAGCAGGCGATCAAGGTCCAGAGGTCAGTTCTTAGACAGGGGAGCTCTGCAATTACAAAGAGTGGATGTATAAGAAGTGGGAGGAAGTTTCGTTGGGTGAAGCTTGAAGATTCTGTGGACACCAAATTTCTGGGCTATCCTCAAGCACTCACCAAGTTCTGCTACTTCATAATGGATGCTTTGCGAGAGAAAGGAGCAAGAATGAAGCCATTGCTATGTGCTTGTGTGTCTCAAGAGCCGAACAAAGTATTGATCGTTGGTGTTTGCGGGAAGCCTCGGCTTGGGGCGTCTCGAGGCAATGCATTTGGGAGAGCGTTTCGAAACGCTGTGGAGGAAATCAGCGCGGAGTTTTTCCACGAGATGTTTGAATCCTCGTGGATTCTTCTTGATGCAACTTCAGTTAACTCTTTCATGGTCAGATTGACTGAGAAGCTCTAA 2445 46.46 MAQRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAADNTPKKDDSPAPAPIPTTHERRQSREYGSSPAHRENPSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGSDGGYGNRGKSRTKPLQAEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLKNPKADNSAKFCSSILFLFVSGCSIEGIMVREQRVESFYAKLRESVTASSLSPLLIFPSTSDVDSLCALKIIFQVLESDSIRYACYPVSSFQEIHKYAGPSLSSSSADPISILLINWGCHRDLRKVLSLGPAAHVFVVDSHRPIHLHNLSDQNEQVVVLYTKDDELQADLAYDFDVSALANASDLNSDDEIDEELDSDDDNDSENEEEDRGGSRKRRRVDKENEDDPVQIFRKLKRGYYYMGTFHGRPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLNAVNSVTLKDGTKIRAPEASRITYDDEPRLMLLQEWSLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERYLPEYGLNDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFVKSDGSSASKKFGVAYDALSLSNLDKLKDGMQQAIKVQRSVLRQGSSAITKSGCIRSGRKFRWVKLEDSVDTKFLGYPQALTKFCYFIMDALREKGARMKPLLCACVSQEPNKVLIVGVCGKPRLGASRGNAFGRAFRNAVEEISAEFFHEMFESSWILLDATSVNSFMVRLTEKL 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1348631 1352793 + CmoCh08G002240.1 Cmo08g00224 386957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00224 814 MobiDBLite consensus disorder prediction 400 416 - -
Cmo08g00224 814 MobiDBLite consensus disorder prediction 172 194 - -
Cmo08g00224 814 MobiDBLite consensus disorder prediction 86 101 - -
Cmo08g00224 814 Pfam CDC45-like protein 641 813 IPR003874 GO:0006270
Cmo08g00224 814 Pfam CDC45-like protein 248 638 IPR003874 GO:0006270
Cmo08g00224 814 MobiDBLite consensus disorder prediction 71 85 - -
Cmo08g00224 814 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 141 175 IPR008700 -
Cmo08g00224 814 MobiDBLite consensus disorder prediction 27 139 - -
Cmo08g00224 814 PANTHER - 222 814 - -
Cmo08g00224 814 MobiDBLite consensus disorder prediction 380 399 - -
Cmo08g00224 814 PANTHER CDC45-RELATED PROTEIN 222 814 IPR003874 GO:0006270
Cmo08g00224 814 MobiDBLite consensus disorder prediction 380 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00224 Cmo-Chr8:1348631 Cmo11g01647 Cmo-Chr11:11713454 6.09E-09 dispersed
Cmo14g01956 Cmo-Chr14:14447256 Cmo08g00224 Cmo-Chr8:1348631 4.89E-06 dispersed
Cmo17g01242 Cmo-Chr17:9852302 Cmo08g00224 Cmo-Chr8:1348631 0 transposed
Cmo18g00562 Cmo-Chr18:4613008 Cmo08g00224 Cmo-Chr8:1348631 1.12E-16 transposed
Cmo17g01241 Cmo-Chr17:9849016 Cmo08g00224 Cmo-Chr8:1348631 2.95E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00224 K06628 - csv:101221761 1059.67