Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00236 ATGATCGATGATGATGTGAAGAAAGATCATAACTCTGAGCAGATTCCTGATTTGGATTTTCAGAAATTGGAAGTCGTAACGGCGCTCGGTCGAGGAGCGAAAGGAGTTGTGTTCTTGGCTCGAAATGCGAACGATGACGACGGCGATGGCGAATGGCTGGCGTTGAAGGTGATTTCTAGAGATTTGATCGAGAGGAAGGCTAAGATTGTGAATAGCGATGCCGATGAGTATCGCAGAGTTTGCTTTGAACGAGAAGTTTTACGTCAGTTTCGGCATCCGCTTTTGCCTCGATTGCGAGGAGTTTTGGATACGAAGAAAGTTGTTGGTTACGCCATTGATTATTGCAATGGACGAGATCTTAATACTCTCAGGAAGAAACAGACCGAGAAAATGTTCTCCGATGACGTTATTAGATTCTACGCGGCGGAATTAGTTATGGCGTTGGAGTATGTACACAGCCTAGGAATAGTTTACAGAGATTTAAAGCCGGACAACGTTATGGTTCAACATAACGGCCACATAATGCTTGTAGATTTTGATCTGTCCACGAGGCTCTCTCAGAAATCTCCTAAATCGTCTCCGTTATTGTTGCCGTCGGTGGAGGTTTTGACGGAATCTAGATCGACGATTAAGAAAAAAAGCAAGAAGAAAAGATTCTTTCATTTTCACCGATTCTGCAACTCCGGCGTGTCGCCGGAAGATTCAGACCAACAGACGGCCAATAAGCCAAAATCTCCGCCAGATTCGTCGGAATCCGACTCATCGGAGAAGTCGAACTCGTTCGTCGGAACAGAGGAGTACGTGGCGCCGGAGATAGTCTCCGGGAAGGGGCATGACTTCGCCGTGGACTGGTGGTCGCTCGGAGTAGTTCTGTACGAGATGCTATACGGAACGACGCCGTTTAGAGGATCAAATCGGAAAGAAACGTTCTACCGAATACTGACAAAGACGCCGGATCTCAGCGGCGAAGTAACACCGTTAAGGGATTTGATAAGGAAATTGCTGGAGAAAGATCCAACGAGGAGGATCGAACTGGAGGAAATCAAGAGCCACAATTTCTTTAAAGGAACTGACTGGGATTTGGTCCTGGAAATTCCCCGGCCGCCGTCGCTGCCGGCAATAGCGACGGAGGACACAGATGGAAATAACTTAATAGATGTTGAGTCTTTCGTCCAAGATATATTTTGCAGCGAAACGGAGAAGAAGAATCGTACGAACGGCGATGAAGGGAACGGGTTTATTCCCACTAATTACACGGAGTCTGACAGATTTCATGTATTCTGA 1284 46.65 MIDDDVKKDHNSEQIPDLDFQKLEVVTALGRGAKGVVFLARNANDDDGDGEWLALKVISRDLIERKAKIVNSDADEYRRVCFEREVLRQFRHPLLPRLRGVLDTKKVVGYAIDYCNGRDLNTLRKKQTEKMFSDDVIRFYAAELVMALEYVHSLGIVYRDLKPDNVMVQHNGHIMLVDFDLSTRLSQKSPKSSPLLLPSVEVLTESRSTIKKKSKKKRFFHFHRFCNSGVSPEDSDQQTANKPKSPPDSSESDSSEKSNSFVGTEEYVAPEIVSGKGHDFAVDWWSLGVVLYEMLYGTTPFRGSNRKETFYRILTKTPDLSGEVTPLRDLIRKLLEKDPTRRIELEEIKSHNFFKGTDWDLVLEIPRPPSLPAIATEDTDGNNLIDVESFVQDIFCSETEKKNRTNGDEGNGFIPTNYTESDRFHVF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1423015 1424536 - CmoCh08G002360.1 Cmo08g00236 386969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00236 427 Gene3D Phosphorylase Kinase; domain 1 23 118 - -
Cmo08g00236 427 SMART serkin_6 23 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00236 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 156 168 IPR008271 GO:0004672|GO:0006468
Cmo08g00236 427 PANTHER FLIPPASE KINASE 1-RELATED 13 407 - -
Cmo08g00236 427 MobiDBLite consensus disorder prediction 230 261 - -
Cmo08g00236 427 SUPERFAMILY Protein kinase-like (PK-like) 22 390 IPR011009 -
Cmo08g00236 427 Pfam Protein kinase domain 252 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00236 427 Pfam Protein kinase domain 24 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00236 427 Gene3D Transferase(Phosphotransferase) domain 1 251 373 - -
Cmo08g00236 427 Gene3D Transferase(Phosphotransferase) domain 1 119 189 - -
Cmo08g00236 427 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 13 407 - -
Cmo08g00236 427 ProSiteProfiles Protein kinase domain profile. 23 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01274 Cmo-Chr2:7598999 Cmo08g00236 Cmo-Chr8:1423015 1.79E-85 dispersed
Cmo08g00236 Cmo-Chr8:1423015 Cmo20g00200 Cmo-Chr20:979509 1.04E-69 dispersed
Cmo08g00236 Cmo-Chr8:1423015 Cmo03g01161 Cmo-Chr3:9165435 7.13E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74517 PF00069 Pkinase 7.50E-30 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00236 K20714 - csv:101223223 615.535