Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00241 ATGGAGAACGAATTCTTCCTCAATGCTACTGAAATCCCTCAATCTCTTATGCATTTCGACTCCAATCCTTCCATGGCGACCTGGAACCACTCCTTTTCGTCCGCTATGGATGTTCAACCTCAACAACTTCAGCTTCATGTTCCTGAGTTCAATAATCACTGTTCTTCCTCTCATCCTTCGCCTCCGGATTGCTATCTCAATCCAGTTCCTCAACAGAGCTTCCAATTCGATTCCGCTCTGAGTTCCATGGTTTCTTCTCCAGCGCCCTCCAATTCCAACCCTACCAACGATAGCTTTGTGATTAGAGAACTGATCGGAAAATTAGGCGCAAATTCCGGGAGGAGAATCTCGGAATTGAACTCTTCTTCTTCTTCTTCCAGTGTGGCGGAGTTTTCATCCGATCCTGGATTTGCTGAGCGTGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGACGTCAGTTGACGAATGAATTCGGTAATTTCAGATCTAACCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAAGCCCTCGGATCTGAAACGAAGTTGCAAGAACAGAAGAACAATTCCTCGTCGCAAGAAGACGAGTCGTCTCTCTCGAATCCGGATAAGGCGATTTCGAATCCACGGAAGAGAAAAGCAATTTCGAAGGCGAAACTCAAAGAGCCGATTGCTGAAACTCCCGAGAAAGGAAGCCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGTGAAAACAGAAGAGGATTCGAAGAAAACCGATGCAAATTTAGCCGAAGAGAAGCAACAAAAAACGAACACGAATCCTCCCGAGCCTCCAAAAGATTACATTCATGTCCGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTCAGAAGAGAGAAAATCAGTGAACGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATTATCAACTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTATCCATGAAGTTAGCATCTGTGAATACAACCAGAGTGGATTTCAACATGGATTCTCTGATCTTAAAACAAACGTACCAATCAGCCACCAGTTTGCCACATCCTATAGATTCCTCAGCTTCAAGCTATTATGGGCACCACCACCACCACCATCACCAAAAGCCCTCTCTCCCAGCCACCTCCATGGACCCTCTCGACTCTGTTTCATGTCAAAATCTCCCAATTCAACTCCCTCCTCTCAGTTCCTTCCCTCTAAATCCCTCTCAGTATCCAAGCTTTGGGGAGGAGGATGAGCTTCTAAGCATTGTTCATATGGGATTCGTCCAGAATCAGCCCCAAGGCAAAAACTATGATTGCAATCTCACAGCTTCTTCAACATAG 1437 45.72 MENEFFLNATEIPQSLMHFDSNPSMATWNHSFSSAMDVQPQQLQLHVPEFNNHCSSSHPSPPDCYLNPVPQQSFQFDSALSSMVSSPAPSNSNPTNDSFVIRELIGKLGANSGRRISELNSSSSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNFRSNLSIANEKLSRVSSSPSLKALGSETKLQEQKNNSSSQEDESSLSNPDKAISNPRKRKAISKAKLKEPIAETPEKGSPKKIKAVETKENVKTEEDSKKTDANLAEEKQQKTNTNPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLILKQTYQSATSLPHPIDSSASSYYGHHHHHHHQKPSLPATSMDPLDSVSCQNLPIQLPPLSSFPLNPSQYPSFGEEDELLSIVHMGFVQNQPQGKNYDCNLTASST 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1463780 1466292 + CmoCh08G002410.1 Cmo08g00241 386974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00241 478 Gene3D - 293 365 IPR036638 GO:0046983
Cmo08g00241 478 SMART finulus 302 352 IPR011598 GO:0046983
Cmo08g00241 478 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 125 463 IPR024097 GO:0006355
Cmo08g00241 478 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 58 113 IPR024097 GO:0006355
Cmo08g00241 478 MobiDBLite consensus disorder prediction 175 285 - -
Cmo08g00241 478 MobiDBLite consensus disorder prediction 175 215 - -
Cmo08g00241 478 PANTHER - 58 113 - -
Cmo08g00241 478 PANTHER - 125 463 - -
Cmo08g00241 478 MobiDBLite consensus disorder prediction 389 415 - -
Cmo08g00241 478 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Cmo08g00241 478 Pfam Helix-loop-helix DNA-binding domain 300 347 IPR011598 GO:0046983
Cmo08g00241 478 MobiDBLite consensus disorder prediction 228 270 - -
Cmo08g00241 478 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 361 IPR036638 GO:0046983
Cmo08g00241 478 CDD bHLH_AtBPE_like 286 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00400 Cmo-Chr2:2069636 Cmo08g00241 Cmo-Chr8:1463780 4.19E-44 dispersed
Cmo06g01603 Cmo-Chr6:11225025 Cmo08g00241 Cmo-Chr8:1463780 1.37E-79 dispersed
Cmo08g00241 Cmo-Chr8:1463780 Cmo14g01559 Cmo-Chr14:12449597 7.65E-80 dispersed
Cmo10g00026 Cmo-Chr10:144859 Cmo08g00241 Cmo-Chr8:1463780 5.51E-44 dispersed
Cmo13g00858 Cmo-Chr13:7861441 Cmo08g00241 Cmo-Chr8:1463780 7.41E-44 dispersed
Cmo17g01190 Cmo-Chr17:9573292 Cmo08g00241 Cmo-Chr8:1463780 3.72E-22 dispersed
Cmo18g00036 Cmo-Chr18:213740 Cmo08g00241 Cmo-Chr8:1463780 8.24E-36 dispersed
Cmo17g01261 Cmo-Chr17:9935909 Cmo08g00241 Cmo-Chr8:1463780 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10219 PF00010 HLH 3.60E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00241 - - csv:101204984 642.884