Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00242 ATGTCTCGAACACCGAATTTTGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAAAGAACACGACGAACTCCGACTGGAAAAGTCCGGCAACTTCCCGACCTCACCTGCATTTCTATCTCTTGAGATCCGGAGTTCTGGGAACCCTGGAGATCGAACAGCCGATAAGGACCGGGCGAGAACGAGGAGTGCCCGCCAGATTTCTTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCTCTGGCTTCAATCACCAATGGGTTCGTTCATCTTATCCGCACTGCCAATCGTCGGATTGCATCGCCTGATTCTCCAGCTGATTCGGCCTCGTCTCGGCTCTATAAGATAATCAAAGTGTTCTTGATTGTGGTGCTTCTGTTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAAACCCCCTAACGTGAGTTCCGCTTCTGCGGAAGTGCTTGGAATGATAGGGTTTGTGTATGCTAGTTGGCTTGAGATTCGGGCAAATTACTTGGCTCCACCGCTGCAGAGCTTGATCAATTTGTGCATTGTGTTATTCCTGTTCCAGTCAGTGGATCGTTTGGTTTTAATGATGGGGTGTTTTTGGATAAAATTCTGGGGATTGAAGCCCGTGGCGGCGTTTGAGTACTCGGACACTGATGAGAATGCTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTCTACCAGCAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAGAATACTTGTTCAGGTTTTAGATGATTCTGATGAAGTAGAAGTTCAACAACTTATCAATGCTGAAGTACAAAAATGGCAACAAAGAGGTGTCCACATATTGTATAGACACCGCCTCATGCGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCTATGGCATGTGATTATGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCATTTGTGAACAAGGACGAAAATTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGAGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCAGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATATTTCTTAATGATGTGAAGGTGTTTCTCAGTGCCTTTGTGAACTTCCGGAATCATATGAAGCGTACAAGAAACAACAACACCGATGGCATTCAGGCCCAATGCAGCTATTTCGTTTGTGCTTCTCTGATATACTCAAATCGAAGGTATGGAACTTATTTGTTATTAGTTTTGAATGCAAAATGTTTTTTTTTCCTTCTTAAAGATTGTATGTTTGTTGACACTCATGTTATCATTGAGATTTGTTTCTGCCATTTTATGACTGTTGCCACCACCGTCGTCTGTAGTTGTCATTACTGCCGTTTTTTTTGCTGCCGTTAG 1542 43.77 MSRTPNFEFQEWWNKQREKEHDELRLEKSGNFPTSPAFLSLEIRSSGNPGDRTADKDRARTRSARQISWVWLLKFQQIAGSLASITNGFVHLIRTANRRIASPDSPADSASSRLYKIIKVFLIVVLLLLVFELVAYFNGWHFKPPNVSSASAEVLGMIGFVYASWLEIRANYLAPPLQSLINLCIVLFLFQSVDRLVLMMGCFWIKFWGLKPVAAFEYSDTDENAPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDRILVQVLDDSDEVEVQQLINAEVQKWQQRGVHILYRHRLMRTGYKAGNLKSAMACDYGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKVFLSAFVNFRNHMKRTRNNNTDGIQAQCSYFVCASLIYSNRRYGTYLLLVLNAKCFFFLLKDCMFVDTHVIIEICFCHFMTVATTVVCSCHYCRFFCCR 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1469915 1477948 + CmoCh08G002420.1 Cmo08g00242 386975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00242 513 PANTHER - 318 417 - -
Cmo08g00242 513 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 24 317 - -
Cmo08g00242 513 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 318 417 - -
Cmo08g00242 513 SUPERFAMILY Nucleotide-diphospho-sugar transferases 225 476 IPR029044 -
Cmo08g00242 513 Pfam Glycosyl transferase family group 2 321 443 IPR001173 -
Cmo08g00242 513 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 316 IPR029044 -
Cmo08g00242 513 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 317 416 IPR029044 -
Cmo08g00242 513 PANTHER - 24 317 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00242 - - - csv:101216681 695.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00242 Cmo-Chr8:1469915 Cmo01g01821 Cmo-Chr1:13352801 4.23E-148 dispersed
Cmo17g01263 Cmo-Chr17:9943064 Cmo08g00242 Cmo-Chr8:1469915 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo02g00432 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 1.1e-57 220.7
Cmo20g00891 CST 220 381 REM Transcription Factor Family AT1G49480 71.6 1.1e-57 220.7
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo01g01628 . 1 714 REM Transcription Factor Family AT2G24630 75.8 0.0e+00 1083.6
Cmo09g00524 . 1 702 REM Transcription Factor Family AT2G24630 75.4 5.4e-313 1070.5
Cmo15g00330 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 2.2e-266 915.6
Cmo04g02854 CST 4 662 REM Transcription Factor Family AT2G24630 69.4 2.8e-266 915.2
Cmo01g01821 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 4.5e-264 907.9
Cmo09g00311 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.3 1.7e-263 906.0
Cmo12g00551 CCT 5 700 REM Transcription Factor Family AT2G24630 65.2 3.1e-257 885.2
Cmo17g01263 . 5 630 REM Transcription Factor Family AT2G24630 54.6 8.4e-202 701.0
Cmo08g00242 . 5 439 REM Transcription Factor Family AT2G24630 50.5 1.3e-125 448.0
Cmo02g00432 CST 220 380 REM Transcription Factor Family AT1G49480 72.0 1.1e-57 220.7
Cmo20g00891 CST 220 381 REM Transcription Factor Family AT1G49480 71.6 1.1e-57 220.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo08g00242 Cmo_Chr08 FPKM 7.403174 8.913916 8.947018 9.768725 8.340051 7.471668 9.189698 12.89165 11.688196 12.59054