Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00242 ATGTCTCGAACACCGAATTTTGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAAAGAACACGACGAACTCCGACTGGAAAAGTCCGGCAACTTCCCGACCTCACCTGCATTTCTATCTCTTGAGATCCGGAGTTCTGGGAACCCTGGAGATCGAACAGCCGATAAGGACCGGGCGAGAACGAGGAGTGCCCGCCAGATTTCTTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCTCTGGCTTCAATCACCAATGGGTTCGTTCATCTTATCCGCACTGCCAATCGTCGGATTGCATCGCCTGATTCTCCAGCTGATTCGGCCTCGTCTCGGCTCTATAAGATAATCAAAGTGTTCTTGATTGTGGTGCTTCTGTTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAAACCCCCTAACGTGAGTTCCGCTTCTGCGGAAGTGCTTGGAATGATAGGGTTTGTGTATGCTAGTTGGCTTGAGATTCGGGCAAATTACTTGGCTCCACCGCTGCAGAGCTTGATCAATTTGTGCATTGTGTTATTCCTGTTCCAGTCAGTGGATCGTTTGGTTTTAATGATGGGGTGTTTTTGGATAAAATTCTGGGGATTGAAGCCCGTGGCGGCGTTTGAGTACTCGGACACTGATGAGAATGCTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTCTACCAGCAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAGAATACTTGTTCAGGTTTTAGATGATTCTGATGAAGTAGAAGTTCAACAACTTATCAATGCTGAAGTACAAAAATGGCAACAAAGAGGTGTCCACATATTGTATAGACACCGCCTCATGCGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCTATGGCATGTGATTATGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCATTTGTGAACAAGGACGAAAATTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGAGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCAGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATATTTCTTAATGATGTGAAGGTGTTTCTCAGTGCCTTTGTGAACTTCCGGAATCATATGAAGCGTACAAGAAACAACAACACCGATGGCATTCAGGCCCAATGCAGCTATTTCGTTTGTGCTTCTCTGATATACTCAAATCGAAGGTATGGAACTTATTTGTTATTAGTTTTGAATGCAAAATGTTTTTTTTTCCTTCTTAAAGATTGTATGTTTGTTGACACTCATGTTATCATTGAGATTTGTTTCTGCCATTTTATGACTGTTGCCACCACCGTCGTCTGTAGTTGTCATTACTGCCGTTTTTTTTGCTGCCGTTAG 1542 43.77 MSRTPNFEFQEWWNKQREKEHDELRLEKSGNFPTSPAFLSLEIRSSGNPGDRTADKDRARTRSARQISWVWLLKFQQIAGSLASITNGFVHLIRTANRRIASPDSPADSASSRLYKIIKVFLIVVLLLLVFELVAYFNGWHFKPPNVSSASAEVLGMIGFVYASWLEIRANYLAPPLQSLINLCIVLFLFQSVDRLVLMMGCFWIKFWGLKPVAAFEYSDTDENAPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDRILVQVLDDSDEVEVQQLINAEVQKWQQRGVHILYRHRLMRTGYKAGNLKSAMACDYGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKVFLSAFVNFRNHMKRTRNNNTDGIQAQCSYFVCASLIYSNRRYGTYLLLVLNAKCFFFLLKDCMFVDTHVIIEICFCHFMTVATTVVCSCHYCRFFCCR 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1469915 1477948 + CmoCh08G002420.1 Cmo08g00242 386975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00242 513 PANTHER - 318 417 - -
Cmo08g00242 513 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 24 317 - -
Cmo08g00242 513 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 318 417 - -
Cmo08g00242 513 SUPERFAMILY Nucleotide-diphospho-sugar transferases 225 476 IPR029044 -
Cmo08g00242 513 Pfam Glycosyl transferase family group 2 321 443 IPR001173 -
Cmo08g00242 513 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 316 IPR029044 -
Cmo08g00242 513 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 317 416 IPR029044 -
Cmo08g00242 513 PANTHER - 24 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00242 Cmo-Chr8:1469915 Cmo01g01821 Cmo-Chr1:13352801 4.23E-148 dispersed
Cmo17g01263 Cmo-Chr17:9943064 Cmo08g00242 Cmo-Chr8:1469915 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00242 - - csv:101216681 695.656