Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00243 ATGGATGAGGATTTTGATATCCCTGCGGCGGCTGACATGAATGACGACTTGGATTTTCCTGATGAAACCGTTGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAGGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGAACTCCGTTCAAGTTCACTCTTGGCCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAAAAGAGTGAAAAAGCTCTTTTTACCATTCCTCCTGACTTGGCATACGGTGAATCTGGATCCCCACCAACCATTCCTCCTAGTGCTACATTGCAGTTTGATGTTGAGCTACTATCTTGGACAAGCGTCAAGGACATATGCAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGACAGAAATGGGAAAATCCAAAAGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTGGAAGATGGAACACTTGTTGCAAAAGCAGATGGAGTGGAATTCACCGTTCGTGATGGTTACTTTTGCCCTGCTCTTGCAAAGGCTGTAAAAACCATGAAGCTAGGTGAAAAGGCACTCCTCACGGTGAAACCACAATATGGGTTTGGGGAGAAGGGTAAACCAGCCTCTAGCAATGAAGGTGCAGTTCCACCAAATGCATCTCTCGATATTACACTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAGAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGGTATGAGAAGCCAAACGATGGCACTGTCGTCAAAGTGAAATTGGTTGGGAAGTTGGGAGATGGAAAGATATTTTTGAAGAAGGGATATGGTGATGGTGAAGAGCCATTTGAGTTTAAAACAGATGAAGAACAAGTGATTGATGGCCTCGATAAAGCTGTGGCAACAATGAAGAAAGGTGAGACAGCCCTGCTGACTATAGCACCTGAGTATGCTTTTGGTTCATCTGAGTCAAAACAGGAGTTAGCTGTAGTTCCTCCAAACTCGACTGTGTATTACGAAGTTGAACTAGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATACCCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGAAAATTTGCCAGAGCCTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAACACGATTCTTCCTTTAGCGAAGAAGAGAAAAAACAGGCTAAAGCATTGAAGGTTGCATGCAATTTGAACGATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAAGGAGGCAGAGAAATTGTGCACCAAGGTACTGGAACTCGAAAGTTCAAATGTTAAAGCTCTTTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGATTTGGCAGAAGTTGACATCAAGAAAGCTCTCGAAATCGATCCAAATAACAGGGATGTGAAATTGGAGTACAAAACTCTAAAGGAGAAGGTGAAGGAATACAACAAGAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAATAAGTGA 1650 42.42 MDEDFDIPAAADMNDDLDFPDETVALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGQKWENPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVRDGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKPASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGTVVKVKLVGKLGDGKIFLKKGYGDGEEPFEFKTDEEQVIDGLDKAVATMKKGETALLTIAPEYAFGSSESKQELAVVPPNSTVYYEVELVAFDKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKFIEHDSSFSEEEKKQAKALKVACNLNDAACKLKLKLYKEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEVDIKKALEIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMNK 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1477784 1482282 - CmoCh08G002430.1 Cmo08g00243 386976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00243 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
Cmo08g00243 549 Gene3D - 148 261 IPR046357 GO:0003755
Cmo08g00243 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 271 380 - -
Cmo08g00243 549 SMART tpr_5 448 481 IPR019734 GO:0005515
Cmo08g00243 549 SMART tpr_5 482 515 IPR019734 GO:0005515
Cmo08g00243 549 SMART tpr_5 399 432 IPR019734 GO:0005515
Cmo08g00243 549 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Cmo08g00243 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Cmo08g00243 549 PANTHER PEPTIDYLPROLYL ISOMERASE 381 549 - -
Cmo08g00243 549 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Cmo08g00243 549 Gene3D - 262 383 IPR046357 GO:0003755
Cmo08g00243 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 379 IPR001179 GO:0003755
Cmo08g00243 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Cmo08g00243 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 167 257 IPR001179 GO:0003755
Cmo08g00243 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 549 - -
Cmo08g00243 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Cmo08g00243 549 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515
Cmo08g00243 549 SUPERFAMILY FKBP-like 148 264 - -
Cmo08g00243 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Cmo08g00243 549 PANTHER PEPTIDYLPROLYL ISOMERASE 271 380 - -
Cmo08g00243 549 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Cmo08g00243 549 SUPERFAMILY FKBP-like 32 149 - -
Cmo08g00243 549 Coils Coil 515 535 - -
Cmo08g00243 549 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Cmo08g00243 549 SUPERFAMILY FKBP-like 264 399 - -
Cmo08g00243 549 Gene3D - 31 147 IPR046357 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g01070 Cmo-Chr7:5508104 Cmo08g00243 Cmo-Chr8:1477784 8.47E-18 dispersed
Cmo08g00243 Cmo-Chr8:1477784 Cmo18g01214 Cmo-Chr18:12066475 4.72E-09 dispersed
Cmo20g00023 Cmo-Chr20:169779 Cmo08g00243 Cmo-Chr8:1477784 1.60E-13 dispersed
Cmo08g00243 Cmo-Chr8:1477784 Cmo08g00244 Cmo-Chr8:1483536 3.77E-11 tandem
Cmo14g01561 Cmo-Chr14:12466506 Cmo08g00243 Cmo-Chr8:1477784 0 transposed
Cmo19g00491 Cmo-Chr19:5849499 Cmo08g00243 Cmo-Chr8:1477784 1.64E-10 transposed
Cmo17g01264 Cmo-Chr17:9947989 Cmo08g00243 Cmo-Chr8:1477784 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00243 K09571 - csv:101214513 998.423