Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00269 | ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA | 549 | 51.73 | MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1684199 | 1685056 | + | CmoCh08G002690.1 | Cmo08g00269 | 387002 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00269 | 182 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 6 | 126 | - | - | |
Cmo08g00269 | 182 | ProSiteProfiles | LOB domain profile. | 9 | 111 | IPR004883 | - | |
Cmo08g00269 | 182 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 17-RELATED | 6 | 126 | - | - | |
Cmo08g00269 | 182 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00269 | Cmo-Chr8:1684199 | Cmo19g00091 | Cmo-Chr19:504806 | 3.40E-57 | dispersed | |
Cmo08g00269 | Cmo-Chr8:1684199 | Cmo02g01800 | Cmo-Chr2:10225373 | 8.65E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10221 | PF03195 | LOB | 6.60E-34 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00269 | K13945 | - | csv:101220863 | 297.36 |