Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00269 ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCCGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA 549 51.73 MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1684199 1685056 + CmoCh08G002690.1 Cmo08g00269 387002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00269 182 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 126 - -
Cmo08g00269 182 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Cmo08g00269 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 6 126 - -
Cmo08g00269 182 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00269 Cmo-Chr8:1684199 Cmo19g00091 Cmo-Chr19:504806 3.40E-57 dispersed
Cmo08g00269 Cmo-Chr8:1684199 Cmo02g01800 Cmo-Chr2:10225373 8.65E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10221 PF03195 LOB 6.60E-34 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00269 K13945 - csv:101220863 297.36