Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00273 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTTCGAAGAGGAGGGAAAATAGTGCTGGAGGGAATGAGGAATCTACTGAACCGGTGGATGACGAAGAGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAAGGAGGAATCTGCAGGAGAGAAGGGAAAGACGCAATATATTGGAAAAGAAGCTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTATTTAAATTTTTGGAGAAGAAGGAAACAGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGATGATTTTGATTTACTAACAATCATTGGCAAAGGTGCTTTTGGGGAGGTATGTTTCACCTTTTTTCTTTTTTTACGTATGAATTTTCTTTTCTACATGACCACATTTGGGAACATACTCATAATCCTCCAATTAGCTAGATTAAACCAAATTCATAGGTCATGTAGAATGCACTACTGGATTCTTGACACTTATATTGTAGGGTCAGACTGGTTATTTTGTGAGATTAATTCAAGTGTACATGAACGAGCCCAGACCCTTGTTCATGTACCAAACCCAATTTTAAACCAAATTTGTTTATGTAGTTACAATTTTGGGGGTAACTTCTCAAGTATATTCCTGATCTTTGTTCGTATTTGTAGAGAGAAGACAACAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCCGAGATGCTTCGAAGGGGCCAGGTAATTTGTGGTGGCGTGTGCTATCTTGTATCCCAGAACTTATTATTCTGCATTCTTAAGGGCATTTTGGAGATCTTTCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTTCTTGCTGAAGTAGACAGCAATTGCATCGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTCTACCTTATTATGGAGTACCTACCTGGGGGAGATATGATGACTTTATTGATGAGAAAGGATACATTGACTGATGATGAAGCCAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAGTCTATTCATAAGCACAATTACATTCATAGGTCAGCAGATTTTTGTGTCCCTTGGATACTTATCATGAATTATTCCTTTCAATTAGATATCAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTACACTCCAAGAACAAGATTTCAATATAGGGAGTGCCCGCAATGGAACTGCACAAAGTGATGAGCGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTACATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGACTGGTGGTCACTTGGAGCAATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCTCTCTTGGCAAAAGATCTCATAAGCAAACTACTATGCAATGTTGACCAGAGGCTAGGTACAAACGGTGCGGATGAAATTAAGGTTCATCCGTGGTTTCAAAATCTTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACATCATCTAAATCTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATCGTCAACGATTATCAATTGCCTGGGATGACTGAATTGAAGAAAAAATGCAACAAACCAAAAAGACCCTCAATCAAGTCACTCTTTGACGACGAATCGGAGGCACGAGATGCAGCTGATTCATCCATACGTTGTCAACCGAGCGTGGGGGGTAGCTGTTCAAACTCAATGGCATCTGAACTGGATGCATTTGAAAAGAGAAAAGAGTCAATAAGGTTAAGTTCGAGCAACGATGGACGAGACGGATTCTTGGTTTCTAACAATCGACCTTGGAGGCGAGCCGAGCCCGTGACAGCGTTGTTCGGAGTCAGACGTGACGTGTTTTATGAGGTGATGAGTTACATCTAA 2241 40.65 MDSARSWFNKLQPRDRLRGSSKRRENSAGGNEESTEPVDDEELSNITKQKVAAAKQYIENHYKEQRRNLQERRERRNILEKKLADADVSEEDQNNLFKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVCFTFFLFLRMNFLFYMTTFGNILIILQLARLNQIHRSCRMHYWILDTYIVGSDWLFCEINSSVHERAQTLVHVPNPILNQICLCSYNFGGNFSSIFLIFVRICREKTTGQVYAMKKLKKSEMLRRGQVICGGVCYLVSQNLLFCILKGILEIFQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAIESIHKHNYIHRSADFCVPWILIMNYSFQLDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFNIGSARNGTAQSDERNAAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSLLAKDLISKLLCNVDQRLGTNGADEIKVHPWFQNLEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMTELKKKCNKPKRPSIKSLFDDESEARDAADSSIRCQPSVGGSCSNSMASELDAFEKRKESIRLSSSNDGRDGFLVSNNRPWRRAEPVTALFGVRRDVFYEVMSYI 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1709636 1716285 - CmoCh08G002730.1 Cmo08g00273 387006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00273 746 ProSiteProfiles AGC-kinase C-terminal domain profile. 565 637 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo08g00273 746 ProSiteProfiles Protein kinase domain profile. 120 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00273 746 Gene3D Transferase(Phosphotransferase) domain 1 331 415 - -
Cmo08g00273 746 Coils Coil 62 82 - -
Cmo08g00273 746 SMART serkin_6 230 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00273 746 MobiDBLite consensus disorder prediction 9 30 - -
Cmo08g00273 746 CDD STKc_NDR_like 234 628 - -
Cmo08g00273 746 Pfam Protein kinase C terminal domain 583 627 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cmo08g00273 746 Gene3D Phosphorylase Kinase; domain 1 51 137 - -
Cmo08g00273 746 Gene3D Phosphorylase Kinase; domain 1 231 265 - -
Cmo08g00273 746 SMART pkinase_C_6 565 629 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo08g00273 746 MobiDBLite consensus disorder prediction 1 45 - -
Cmo08g00273 746 Gene3D Phosphorylase Kinase; domain 1 284 330 - -
Cmo08g00273 746 Gene3D Transferase(Phosphotransferase) domain 1 456 584 - -
Cmo08g00273 746 Pfam Protein kinase domain 234 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00273 746 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 134 - -
Cmo08g00273 746 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 287 668 - -
Cmo08g00273 746 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 234 262 - -
Cmo08g00273 746 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 134 - -
Cmo08g00273 746 PANTHER SERINE/THREONINE-PROTEIN KINASE 287 668 - -
Cmo08g00273 746 PANTHER SERINE/THREONINE-PROTEIN KINASE 234 262 - -
Cmo08g00273 746 SUPERFAMILY Protein kinase-like (PK-like) 234 618 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00273 Cmo-Chr8:1709636 Cmo08g01054 Cmo-Chr8:6806948 2.00E-45 dispersed
Cmo17g01290 Cmo-Chr17:10140158 Cmo08g00273 Cmo-Chr8:1709636 1.68E-61 wgd
Cmo17g00156 Cmo-Chr17:904544 Cmo08g00273 Cmo-Chr8:1709636 6.52E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74518 PF00069 Pkinase 7.40E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00273 K08790 - csv:101221720 739.569