Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00285 ATGAGAGGAAATGGAACGTCCAATAAAGGAGGGCAGATGGGGAAGGTGAGCGTTTCGTCTGCCATGTCTCATCAGCTGCTTTCTTCCATACCCTTTTTTCACCATTACAAAACAACAAACCTCTGCAACGGAGATACCCACTTGCAGCAATTCGCCATTTCTCCCATTTTCCCCCTTTCATTCCACCTCTGTTTCGCTCGCTTCGAGACGATATTGCAAAACGTCGCAGGACAAATGGGAACAGCCTCTGTACAATGTCTAATTAACAGTATTTCCAGATTCATTCATCTTGTTTCATGCCATACTACAAAGTCTTTGCCTCTTCCTAAGAACTGCAAGAATCTTGCTGTTGTCTTGAAACATCTGAAACTCGTGCTTGATGATGTCATTAGTCTCAAACTATCCTCCGATGAGTTACTTTATAGAGAATGTGAGTCTCTGGATATCGCTGTTAATGACGCTCGGGAGTTCATTGAAAACTGGTGTCCTAAGATGAGCAAAATTTGCAGCGCTTTGAAATGTGATCCGCTGCTTATAAAGATTCAAAGCTCTTTACAAGAGATTTGTGAGATTGTATGGAAGTTGTCGGAATCAGTATCATGTAGCTCAAGTCTAAATGCTGTTCAGAAATGTCTTGAAGGTCTTCAATCATTGAAGCAGGAAAGGATATCTGAATCTATAGAAGAGGCTTTAATTAGTCAAAGGAGTGGCATTGGTCCGAACTCCGAAGATCTTCTAAAAATTATCGAAGTTCTTCATTTGATGTCGAATCAAGAACTTCTGAAGGAGACTATAGCAGTCGAAAAGGAGAGAATTGATGCTGAACAAAACAATGCGAAAGAGGAACTATATCGGATCAACGAAATTATGGATCTAATTATCCGTATACGAGATTGGATGATTAGAAAGGACTATTTTCATGGGATAAATGGAGTATCAGTTCCTTCATACTTCCGCTGTCCATTGTCGTTGGAACTGATGCTTGATCCAGTAATTGTGGCGTCTGGCCAAACTTATGACAGGTCCTCTATTCAAAAGTGGATAGATAGTGGGCTGAACATCTGCCCCAACACTCATCAGACGCTCACGCATACAAATCTCATTCCCAATTACACAGTTAAAGCCATGATTTTGAGTTGGTGCGATGAAAACAAACTGAATATTTCTAGTTTATCATCGTTGGTTCAATTGTCTCGGCAGGATTCAAATCGAAGTGATAGCTCTCGATCATCTCCTGAAGTTGAAAAGGGTTCTAACAAGCGAAATGGGGACGTTTTTACTAGTTTAATTGGGGGAAAATCTAATGAAGGCCAGAGAAACGAAACCGAAAAGTTTGACCACCCTTCCCCTCAGCAGTCATATATCTACAGCAGGAGTGTATCAGCCTCCAGTGCCTTCTCTAGCATTGATTATGTTCCCTCGGCCCTTAATGAGGTGTTGAAGATATCAACTAAACACGAAATCACATCAGAACATCCTACTGCATCTCATAATGAAGCATCGTGGTTGAATTCATCATTAGAAGGTGGACAATTACAGGCTTGTAAAACAGAGACAGGCATGGTGGAGAATGGAAACTGTAATAGTACAACAGGTAACTTAGTTCCAGTCGAACCTGAATCCGATAACTCGTCGGGGGATTTGCATATCAAGAAATTAGTTGCAGACCTTCAGAGCCAAAAGGATGAAGTTAAAATGAAAGCTGCAGAAGAATTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTGTTATAATAGGCCAATGTGGGGCTATAGGCCCCTTACTTTCACTGTTATATTCCGATGGAAAGCAGATACAAGAGCATGCAGTGACAGCTCTCTTAAACCTGTCAATTAATGAAAATAATAAAGTCATGATTGCACAAGGAGGAGCTATAGAACCACTTATTCATGTCTTGAAGACAGGAACATCTACTGCTAAAGAAAATTCTGCAGCAACTTTATTCAGTCTCTCTGTATTGGAAGAATACAAGGCCAAAATCGGTCAGTCTGGTGCAGTTAAAGCCTTGGTCAATCTCTTAGGTGAGGGTACACTGAGGGGTAAGAAAGATGCAGCCACTGCTTTGTTCAACTTATCAATTTTTCATGAAAATAAGGCTCGTATAGTTCAAGCAGGAGCAGTTAAGTACCTTGTTGGGCTACTAGCCACTACTACGGGTATGGTTGATAAGGCTGCTGCACTTCTTGCTAATTTGTCGACAATTTCGGAGGGACGATTGGCAATTGCTCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATGTGGATCTACGAGAGGAAAGGAAAATGCTGCATCTATTCTGTTGCAACTATGCCTTCATAGTCCCAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCCGTTCCACCTCTCGTCGCCCTATCTCAGTCTGGCACACCTAGAGCAAAAGAAAAGGCACAACAGCTACTCAGCCATTTTCGGAATCAAAGAGATGGAAGCACAGGGAAAGCAAAATCATAG 2508 41.75 MRGNGTSNKGGQMGKVSVSSAMSHQLLSSIPFFHHYKTTNLCNGDTHLQQFAISPIFPLSFHLCFARFETILQNVAGQMGTASVQCLINSISRFIHLVSCHTTKSLPLPKNCKNLAVVLKHLKLVLDDVISLKLSSDELLYRECESLDIAVNDAREFIENWCPKMSKICSALKCDPLLIKIQSSLQEICEIVWKLSESVSCSSSLNAVQKCLEGLQSLKQERISESIEEALISQRSGIGPNSEDLLKIIEVLHLMSNQELLKETIAVEKERIDAEQNNAKEELYRINEIMDLIIRIRDWMIRKDYFHGINGVSVPSYFRCPLSLELMLDPVIVASGQTYDRSSIQKWIDSGLNICPNTHQTLTHTNLIPNYTVKAMILSWCDENKLNISSLSSLVQLSRQDSNRSDSSRSSPEVEKGSNKRNGDVFTSLIGGKSNEGQRNETEKFDHPSPQQSYIYSRSVSASSAFSSIDYVPSALNEVLKISTKHEITSEHPTASHNEASWLNSSLEGGQLQACKTETGMVENGNCNSTTGNLVPVEPESDNSSGDLHIKKLVADLQSQKDEVKMKAAEELRLLAKDNVENRVIIGQCGAIGPLLSLLYSDGKQIQEHAVTALLNLSINENNKVMIAQGGAIEPLIHVLKTGTSTAKENSAATLFSLSVLEEYKAKIGQSGAVKALVNLLGEGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVGLLATTTGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVECGSTRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGSTGKAKS 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1768181 1776021 - CmoCh08G002850.1 Cmo08g00285 387018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00285 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 713 754 IPR000225 GO:0005515
Cmo08g00285 835 SMART Ubox_2 317 380 IPR003613 GO:0004842|GO:0016567
Cmo08g00285 835 Pfam Armadillo/beta-catenin-like repeat 579 618 IPR000225 GO:0005515
Cmo08g00285 835 Pfam Armadillo/beta-catenin-like repeat 663 700 IPR000225 GO:0005515
Cmo08g00285 835 Gene3D - 541 686 IPR011989 -
Cmo08g00285 835 SUPERFAMILY RING/U-box 312 386 - -
Cmo08g00285 835 PANTHER U BOX DOMAIN-CONTAINING 84 830 - -
Cmo08g00285 835 CDD RING-Ubox_PUB 318 360 IPR045210 -
Cmo08g00285 835 MobiDBLite consensus disorder prediction 406 420 - -
Cmo08g00285 835 SUPERFAMILY ARM repeat 550 822 IPR016024 -
Cmo08g00285 835 Gene3D - 687 832 IPR011989 -
Cmo08g00285 835 MobiDBLite consensus disorder prediction 814 835 - -
Cmo08g00285 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 714 IPR000225 GO:0005515
Cmo08g00285 835 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 84 830 - -
Cmo08g00285 835 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 590 632 IPR000225 GO:0005515
Cmo08g00285 835 Coils Coil 257 278 - -
Cmo08g00285 835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 388 IPR013083 -
Cmo08g00285 835 MobiDBLite consensus disorder prediction 421 436 - -
Cmo08g00285 835 MobiDBLite consensus disorder prediction 399 452 - -
Cmo08g00285 835 SMART arm_5 620 660 IPR000225 GO:0005515
Cmo08g00285 835 SMART arm_5 702 741 IPR000225 GO:0005515
Cmo08g00285 835 SMART arm_5 579 619 IPR000225 GO:0005515
Cmo08g00285 835 SMART arm_5 661 701 IPR000225 GO:0005515
Cmo08g00285 835 SMART arm_5 742 782 IPR000225 GO:0005515
Cmo08g00285 835 Pfam U-box domain 314 385 IPR003613 GO:0004842|GO:0016567
Cmo08g00285 835 ProSiteProfiles U-box domain profile. 313 387 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00683 Cmo-Chr7:3085127 Cmo08g00285 Cmo-Chr8:1768181 4.19E-100 dispersed
Cmo08g00285 Cmo-Chr8:1768181 Cmo20g00999 Cmo-Chr20:5999322 7.26E-164 dispersed
Cmo20g00684 Cmo-Chr20:3363662 Cmo08g00285 Cmo-Chr8:1768181 3.01E-34 dispersed
Cmo17g01302 Cmo-Chr17:10215174 Cmo08g00285 Cmo-Chr8:1768181 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00285 - - csv:101219353 1217.99