Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00292 ATGTTGTTTGCCGACATGTCGTTATCGTCGTCGTCGTCTGATTCGAGCCCTTGCTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGATGGGAGGTCGGGTGCTCGCCTGTCTTAGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTAGAAGAACTATTAAGTTTGACTTCTTAA 531 50.09 MLFADMSLSSSSSDSSPCLSPEMHVKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELLSLTS 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1799748 1800278 - CmoCh08G002920.1 Cmo08g00292 387025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00292 176 SMART rav1_2 47 111 IPR001471 GO:0003700|GO:0006355
Cmo08g00292 176 MobiDBLite consensus disorder prediction 1 19 - -
Cmo08g00292 176 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Cmo08g00292 176 Gene3D AP2/ERF domain 47 108 IPR036955 GO:0003700|GO:0006355
Cmo08g00292 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 7 174 - -
Cmo08g00292 176 MobiDBLite consensus disorder prediction 1 21 - -
Cmo08g00292 176 PANTHER DNA-BINDING DOMAIN 7 174 IPR044808 GO:0003700|GO:0009873
Cmo08g00292 176 SUPERFAMILY DNA-binding domain 47 107 IPR016177 GO:0003677
Cmo08g00292 176 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Cmo08g00292 176 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Cmo08g00292 176 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Cmo08g00292 176 ProSiteProfiles AP2/ERF domain profile. 47 105 IPR001471 GO:0003700|GO:0006355
Cmo08g00292 176 Coils Coil 137 157 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00292 Cmo19g00097 CCT
Cmo02g01795 Cmo08g00292 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01334 Cmo-Chr6:9931260 Cmo08g00292 Cmo-Chr8:1799748 1.35E-45 dispersed
Cmo08g00292 Cmo-Chr8:1799748 Cmo19g00097 Cmo-Chr19:548824 3.42E-59 dispersed
Cmo08g00292 Cmo-Chr8:1799748 Cmo08g00293 Cmo-Chr8:1804891 9.72E-29 tandem
Cmo02g01795 Cmo-Chr2:10198332 Cmo08g00292 Cmo-Chr8:1799748 3.34E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10225 PF00847 AP2 6.80E-15 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00292 K14516 - csv:101205053 239.965