Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00311 ATGGAAGAGGTTGAAGAAGCTAATAGAGAAGCTGTGGAGAGTTGTCATAAAGTGTTGAATCTATTGACTGTCGCGTTGCCTCAAGATCGTCAATCCAAGATTCAGAGTTGTTTAATGGCGGAAACTGGAGCGGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTAATTCTTCTTCTTCTGGGTTGGGGCATGCAAGGGTCAGGAAAAACAGGGTTAAGCCACCCTTCTCTTCCTCTTCCTCCTCTTCTCCTCTTCCCCAATCCATGTTCTTACAAACTTCTTCCCCCGATTGCAGAATGGACCTTCTCCAGGCCAGGAATTTGCAGATGGGTCCTCTTTCCTTGGGGAATCCATGTCTGGAATTGAACTCAAATGCTAAAAGTTGTTCAATCCAACAACATCAGTCTACTTCCCATCATTTTCTTCAGAACAGGATGTTGTTGAATAATCCTAATCCTAATGCTCCACAGCCTGAAATGGTGTATCTTAGGAGCCACAGTGGTATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTCATTTCTTCATTGAGCATTGATGGGAGTGTAGCTAACTTGGATGGGAGTGGCTTTCATTTGATCGGGACGCCCCGATCTTCCGATCAGAATTCACACCATAGGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGTACTGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCCATAAGTAACAAGCTTGCTGATATTCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCGAGGAAACACGTCGAGAGGTGTGTCGAGGAACCGTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCGAGAATAGCTTCTCAGTCTGAAAATACTTGA 1020 44.61 MEEVEEANREAVESCHKVLNLLTVALPQDRQSKIQSCLMAETGAAVFKFRKVLCLLNSSSSGLGHARVRKNRVKPPFSSSSSSSPLPQSMFLQTSSPDCRMDLLQARNLQMGPLSLGNPCLELNSNAKSCSIQQHQSTSHHFLQNRMLLNNPNPNAPQPEMVYLRSHSGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSGFHLIGTPRSSDQNSHHRRKCSGRGEDGSVKCGSTGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCVEEPSMLIVTYEGEHNHPRIASQSENT 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1911836 1914224 - CmoCh08G003110.1 Cmo08g00311 387044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00311 339 Gene3D WRKY domain 257 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo08g00311 339 MobiDBLite consensus disorder prediction 218 232 - -
Cmo08g00311 339 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo08g00311 339 MobiDBLite consensus disorder prediction 74 91 - -
Cmo08g00311 339 Pfam Plant zinc cluster domain 224 269 IPR018872 -
Cmo08g00311 339 SUPERFAMILY WRKY DNA-binding domain 269 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo08g00311 339 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 339 - -
Cmo08g00311 339 MobiDBLite consensus disorder prediction 65 91 - -
Cmo08g00311 339 MobiDBLite consensus disorder prediction 212 234 - -
Cmo08g00311 339 Pfam WRKY DNA -binding domain 273 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo08g00311 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 339 IPR044810 GO:0003700
Cmo08g00311 339 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00311 Cmo19g00061 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00311 Cmo-Chr8:1911836 Cmo17g01197 Cmo-Chr17:9602611 1.79E-178 dispersed
Cmo02g01814 Cmo-Chr2:10274315 Cmo08g00311 Cmo-Chr8:1911836 2.75E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10230 PF03106 WRKY 3.30E-26 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00311 - - csv:101216822 534.258