Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00311 | ATGGAAGAGGTTGAAGAAGCTAATAGAGAAGCTGTGGAGAGTTGTCATAAAGTGTTGAATCTATTGACTGTCGCGTTGCCTCAAGATCGTCAATCCAAGATTCAGAGTTGTTTAATGGCGGAAACTGGAGCGGCTGTGTTTAAGTTTAGGAAAGTTTTGTGTCTTCTTAATTCTTCTTCTTCTGGGTTGGGGCATGCAAGGGTCAGGAAAAACAGGGTTAAGCCACCCTTCTCTTCCTCTTCCTCCTCTTCTCCTCTTCCCCAATCCATGTTCTTACAAACTTCTTCCCCCGATTGCAGAATGGACCTTCTCCAGGCCAGGAATTTGCAGATGGGTCCTCTTTCCTTGGGGAATCCATGTCTGGAATTGAACTCAAATGCTAAAAGTTGTTCAATCCAACAACATCAGTCTACTTCCCATCATTTTCTTCAGAACAGGATGTTGTTGAATAATCCTAATCCTAATGCTCCACAGCCTGAAATGGTGTATCTTAGGAGCCACAGTGGTATTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCTTTCATTTCTTCATTGAGCATTGATGGGAGTGTAGCTAACTTGGATGGGAGTGGCTTTCATTTGATCGGGACGCCCCGATCTTCCGATCAGAATTCACACCATAGGAGGAAGTGCAGTGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGTACTGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCCATAAGTAACAAGCTTGCTGATATTCCTCCTGATGATTATTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCTCACCCAAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCGAGGAAACACGTCGAGAGGTGTGTCGAGGAACCGTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCGAGAATAGCTTCTCAGTCTGAAAATACTTGA | 1020 | 44.61 | MEEVEEANREAVESCHKVLNLLTVALPQDRQSKIQSCLMAETGAAVFKFRKVLCLLNSSSSGLGHARVRKNRVKPPFSSSSSSSPLPQSMFLQTSSPDCRMDLLQARNLQMGPLSLGNPCLELNSNAKSCSIQQHQSTSHHFLQNRMLLNNPNPNAPQPEMVYLRSHSGINLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSGFHLIGTPRSSDQNSHHRRKCSGRGEDGSVKCGSTGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCVEEPSMLIVTYEGEHNHPRIASQSENT | 339 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1911836 | 1914224 | - | CmoCh08G003110.1 | Cmo08g00311 | 387044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00311 | 339 | Gene3D | WRKY domain | 257 | 331 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g00311 | 339 | MobiDBLite | consensus disorder prediction | 218 | 232 | - | - | |
Cmo08g00311 | 339 | ProSiteProfiles | WRKY domain profile. | 266 | 332 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g00311 | 339 | MobiDBLite | consensus disorder prediction | 74 | 91 | - | - | |
Cmo08g00311 | 339 | Pfam | Plant zinc cluster domain | 224 | 269 | IPR018872 | - | |
Cmo08g00311 | 339 | SUPERFAMILY | WRKY DNA-binding domain | 269 | 331 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g00311 | 339 | PANTHER | WRKY DNA-BINDING PROTEIN 21-RELATED | 2 | 339 | - | - | |
Cmo08g00311 | 339 | MobiDBLite | consensus disorder prediction | 65 | 91 | - | - | |
Cmo08g00311 | 339 | MobiDBLite | consensus disorder prediction | 212 | 234 | - | - | |
Cmo08g00311 | 339 | Pfam | WRKY DNA -binding domain | 273 | 330 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo08g00311 | 339 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 2 | 339 | IPR044810 | GO:0003700 | |
Cmo08g00311 | 339 | SMART | WRKY_cls | 271 | 331 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo08g00311 | Cmo19g00061 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00311 | Cmo-Chr8:1911836 | Cmo17g01197 | Cmo-Chr17:9602611 | 1.79E-178 | dispersed | |
Cmo02g01814 | Cmo-Chr2:10274315 | Cmo08g00311 | Cmo-Chr8:1911836 | 2.75E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
10230 | PF03106 | WRKY | 3.30E-26 | CL0274 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00311 | - | - | csv:101216822 | 534.258 |