Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00313 | ATGAGCAAATTCGAATCCAGTTACCATGAGATTCTACTTCTTGACATAGGCAAAGCCGCCCGAAGGAGGTGGAGAATTGCCTTTGCAGTAATATCCTCAATTCGGGCCATGCTTTCCCTAGCAGTGTCAAGAAGAAAAGATCATTGCAGTTTAATCAACTGTGAGATCTTGGAGGAAGGTTCATATGAGGAACAGATAGTCTACACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTAAAGAACAAAAACTTGGAAGCTTACTGTGAGCATGGGAAAGCTCCAGCCATTGCTAAGTCTCTAGGAACAAATCCAGAGAAGGGAATCAAGGATAATGATGATGTTGTGAATGAACGACGTCAAGTATTCGGTTCGAATACTTACCACAAGCGGCCTCCCAAGAGTTTCCTTCATTTTGTGGTGGAAGCTTTCAAGGACACCACCATTGTCATTTTACTTATATGTGCGGCTCTGGCACTTGGGTTTGGAATAAAAGAACATGGAGGACAAGAAGGATGGTATGAAGGCGGGAGCATATTTGTAGCTGTTGCGCTGGTGGTTGTTGTTTCAGCCATCAGCAACTTCAGACAGGAGATTCAATTCGAGAAGTTATCAAAAATAAGTAATAACATCAAAGTGGAGGTAGTGAGAGATGGAAGACGCATAGAAGTTTCCATCTTCAACATAGTGGTTGGAGATGTCGTGGTTCTAAACCTTGGGGACCAAATTCCAGCAGATGGGTTGTTCTTAAGTGGTCATTCATTGCAAGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTGATACTCGATTCAACGGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTTGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACGGCCTGGGGCGAGATGATGAGCTCGATATCTCGGGATTCTGAGGAGCAAACACCTCTGCAAGTTCGTCTTAACAAATTGACCACTACTATAGGAAAGGTAGGCCTCTCAGTCGCCTTCATAGTCCTTGTTGTCATGTTGGCGCGCTATTTCACAGGAAACACAACCGATGATTTTGGGAACACAGAGTACAATGGTCAAAAAACAGACATAGATGATGTGATCAATGCAGTTACCCGTATAGTTGCTGCTGCAATTACCATAGTAGTTGTTGCAATCCCTGAAGGCTTGCCATTGGCTGTTACATTAACACTCGCTTATTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGGAACTTTCTGCTTGTGAAACGATGGGATCAGCAACTGTGATTTGCACGGACAAAACAGGAACTTTGACATTAAACAAAATGAAAGTTACCAAATTTTGGCTCGGCCAAGAGTTCATTGAGGAAGAAAACCCTTCCCACACCATAGCAGAGACTGTTAGTGAGTTAATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCTCCAGAATCCGAAATTGAAATCTCTGGTAGTCCAACTGAGAAAGCCATTCTCTCTTGGGCGGTCTCAGAATTCAGTATGGACATGGTAAAGTTGAAAAATGCATATTCCATTCTTCATGTGGAAACCTTCAATTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCTGATAACACAATCCATCAGCACTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGTTCTTGTTACATTGAAAGAAATGGGAAAACATATCCCTTAGATAACGAAAGCCGAAGAAAACTTGAGAATATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGAAGAGGAAAAAAATAGCATGCCAACTGCCTCAGACGTGAAAGAAGATGACTATATATTAATGGGAATAGTTGGCATGAAAGACCCATGTAGACAAGGGGTGAAGAAAGCTGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAAATGATCACAGGTGACAACGTTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTCGATCACAACACCGCATGCAGAGGAGAAGTAATAGAAGGTTCTGAATTCCGAAACTACTCAAGTGAAGAAAGACTGCAGAGGGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGACGGCACGAACGACGCACCCGCTCTAAAAGAGGCTGACATTGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAGAGTTCAGACATCGTTATCTTGGATGATAACTTCACTACAGTAGTCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAATATCCAGAAATTCATCCAATTTCAATTGACAGTCAACGTAGCAGCTCTCACAATTAACTTTATAGCAGCAGTATCAGCTGGAGAAGTTCCCTTAACAGCAGTCCAATTGTTGTGGGTGAACCTCATAATGGATACACTGGGTGCTCTTGCACTTGCTACTGAAAGACCAAATGATGAACTAATGCACAAGCCTCCAGTGGGAAGAACAGAACCCCTAATAACAAATATTATGTGGAGGAACCTTCTAGCCCAAGCTTTATATCAAATAGCAATACTCCTAATTTTCCAGTTCCAAGGAAGCAACATCTTCAATGTAAGTGAAATGGTAAACGATACACTAATCTTCAACACTTTTGTCCTCTGCCAAATCTTCAACGAGTTCAACTCAAGGAAACTAGAGAAACAGAACGTCTTTGAAGGCATTCTAAAGAATCATCTATTTCTAGGAATTGTGGGAGTAACGGTTGTTCTACAGGTTATCATGGTAGAATTCCTAAAGAAATTTGCAAATACAGTGAATCTAAATGGCTGGCAGTGGGGACTTTGCATTGCTATTGCAGCTGTTTCTTGGCCTATTGGTTGGATTGTCAAACTCTTGCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAGTGTTTTAAGGGCTGA | 3048 | 42.03 | MSKFESSYHEILLLDIGKAARRRWRIAFAVISSIRAMLSLAVSRRKDHCSLINCEILEEGSYEEQIVYTKDDQKKLIEMVKNKNLEAYCEHGKAPAIAKSLGTNPEKGIKDNDDVVNERRQVFGSNTYHKRPPKSFLHFVVEAFKDTTIVILLICAALALGFGIKEHGGQEGWYEGGSIFVAVALVVVVSAISNFRQEIQFEKLSKISNNIKVEVVRDGRRIEVSIFNIVVGDVVVLNLGDQIPADGLFLSGHSLQVDESSMTGESDHVILDSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTTIGKVGLSVAFIVLVVMLARYFTGNTTDDFGNTEYNGQKTDIDDVINAVTRIVAAAITIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRELSACETMGSATVICTDKTGTLTLNKMKVTKFWLGQEFIEEENPSHTIAETVSELINQGVGLNTTGSVYQPSPESEIEISGSPTEKAILSWAVSEFSMDMVKLKNAYSILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSMCSCYIERNGKTYPLDNESRRKLENIIQGMAASSLRCIAFAYRQISEEEEKNSMPTASDVKEDDYILMGIVGMKDPCRQGVKKAVETCKSAGVSIKMITGDNVFTAKAIATECGILDFDHNTACRGEVIEGSEFRNYSSEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVVTVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFNVSEMVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVGVTVVLQVIMVEFLKKFANTVNLNGWQWGLCIAIAAVSWPIGWIVKLLPVSDKPFLSYFKCFKG | 1015 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1930481 | 1934432 | - | CmoCh08G003130.1 | Cmo08g00313 | 387046 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00313 | 1015 | Pfam | E1-E2 ATPase | 211 | 413 | - | - | |
Cmo08g00313 | 1015 | SFLD | p-type atpase | 417 | 797 | IPR044492 | - | |
Cmo08g00313 | 1015 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 437 | 443 | IPR018303 | - | |
Cmo08g00313 | 1015 | PRINTS | H+-transporting ATPase (proton pump) signature | 590 | 608 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo08g00313 | 1015 | PRINTS | H+-transporting ATPase (proton pump) signature | 744 | 760 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo08g00313 | 1015 | PRINTS | H+-transporting ATPase (proton pump) signature | 776 | 801 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo08g00313 | 1015 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 715 | 824 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo08g00313 | 1015 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 379 | 474 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo08g00313 | 1015 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 93 | 1001 | IPR023298 | - | |
Cmo08g00313 | 1015 | SUPERFAMILY | Calcium ATPase, transduction domain A | 210 | 309 | IPR008250 | - | |
Cmo08g00313 | 1015 | Pfam | Cation transporting ATPase, C-terminus | 829 | 999 | IPR006068 | - | |
Cmo08g00313 | 1015 | Gene3D | - | 114 | 311 | - | - | |
Cmo08g00313 | 1015 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 20 | 988 | - | - | |
Cmo08g00313 | 1015 | PANTHER | CATION TRANSPORTING ATPASE | 20 | 988 | - | - | |
Cmo08g00313 | 1015 | Gene3D | - | 432 | 789 | IPR023214 | - | |
Cmo08g00313 | 1015 | Pfam | haloacid dehalogenase-like hydrolase | 433 | 758 | - | - | |
Cmo08g00313 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 258 | 272 | - | - | |
Cmo08g00313 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 435 | 449 | - | - | |
Cmo08g00313 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 636 | 647 | - | - | |
Cmo08g00313 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 658 | 668 | - | - | |
Cmo08g00313 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 744 | 763 | - | - | |
Cmo08g00313 | 1015 | PRINTS | P-type cation-transporting ATPase superfamily signature | 768 | 780 | - | - | |
Cmo08g00313 | 1015 | SFLD | Haloacid Dehalogenase | 417 | 797 | - | - | |
Cmo08g00313 | 1015 | SUPERFAMILY | HAD-like | 433 | 849 | IPR036412 | - | |
Cmo08g00313 | 1015 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 442 | 640 | IPR023299 | GO:0000166 | |
Cmo08g00313 | 1015 | CDD | P-type_ATPase_Ca_PMCA-like | 116 | 877 | - | - | |
Cmo08g00313 | 1015 | Gene3D | - | 142 | 998 | - | - | |
Cmo08g00313 | 1015 | SMART | Cation_ATPase_N_a_2 | 89 | 164 | IPR004014 | - | |
Cmo08g00313 | 1015 | Gene3D | - | 445 | 643 | IPR023299 | GO:0000166 | |
Cmo08g00313 | 1015 | Pfam | Cation transporter/ATPase, N-terminus | 95 | 158 | IPR004014 | - | |
Cmo08g00313 | 1015 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 60 | 1001 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00313 | Cmo-Chr8:1930481 | Cmo12g01137 | Cmo-Chr12:10355245 | 0 | dispersed | |
Cmo13g00152 | Cmo-Chr13:940015 | Cmo08g00313 | Cmo-Chr8:1930481 | 5.46E-111 | dispersed | |
Cmo08g00313 | Cmo-Chr8:1930481 | Cmo12g00924 | Cmo-Chr12:8557941 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00313 | K01537 | - | csv:101220140 | 1685.23 |