Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00317 ATGTTTGCTACAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTACTGTCTCTTTAAATTCTCTCCTTCCACCACAAAAGATCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGACCCAGATGCTGAAGTGATAGCACTTTCACCAAGAACACTTCTTGCTACGAATAGATTCGTGTGTGAAATTTGCAACAAAGGCTTCCAAAGGGATCAAAATTTGCAGCTTCATAGGAGAGGCCATAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACGGGAATCAAAAAGCATTATTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCGAAAGTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCTTTGGCTGAGGAAAGTGCACGGCTTTCAGCTAACCAATTCGTCGTTGCGGCGGAGGTTGAGGCGGTGGCGGAGGGTGGGGCGGCTACCTCCACCGCCTCTGCCTCCGCCCAATCTCTCTTCCCTTTTGGTAATCTTAATCAATTCCCTAGCTCTTCGCTGTCACGGCCGCCACAAACTTATATGTCCCTTAACCCTTGGGATAATCCCCAAAACCCTAACCCTAATCAAACCCACCAAATTATCAAGCCAGAAGACTCACATTCTCACCATTTTCACCAAATTCCAACTTTGCCCCTCGCCGGCTCCTCCCCAAGCACCGCCACCAACAACCCTTTTGGTATAATTCAAGACCACCACCGCCGCCATCATCCCCACCACCACCAGAAGGCAGGCTCTTCATCCTCCTCTTCCATGATAGCCTCACCGTTTAGGAACCTCCACGTGTCGGTGAATCCTGCCATGTCAGCTCATCTATCAGCCACTGCCTTACTCCAAAAGGCTGCAACAGTTGGGGTTGGAGCTGTGAAATCCAGTCAGCATCAACCCGAGTCAGTGGGCCATATGACTCACTTCAATATGCCTGACATCCCCGAGTTCGCTGCACCAACTCATATGGACTCGCTGACTCATCAACTCGGCCCCGACTACGCCACGTGGCAGAAGACAGATAGACTGACCAGGGACTTTCTCGGTTTGACTGGCGATGGGAACGGCGGCGGAGGTGGCAGTGGAGCGATGCAGGTTAGCATGAGTGTCAAAGATATGCTAACGTACGCAGGAGGATTGGAGATTTTTAAACCTCATAATAATAATAATAATAATAACAATAATAATAGTAATAATAATAATCATAGTGCTTTTGGTTTTGCGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA 1458 46.71 MFATTMSNSTSLSEEATVSLNSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVVAAEVEAVAEGGAATSTASASAQSLFPFGNLNQFPSSSLSRPPQTYMSLNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPTLPLAGSSPSTATNNPFGIIQDHHRRHHPHHHQKAGSSSSSSMIASPFRNLHVSVNPAMSAHLSATALLQKAATVGVGAVKSSQHQPESVGHMTHFNMPDIPEFAAPTHMDSLTHQLGPDYATWQKTDRLTRDFLGLTGDGNGGGGGSGAMQVSMSVKDMLTYAGGLEIFKPHNNNNNNNNNNSNNNNHSAFGFAEPAANETWDC 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1974557 1977159 - CmoCh08G003170.1 Cmo08g00317 387050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00317 485 MobiDBLite consensus disorder prediction 452 473 - -
Cmo08g00317 485 SMART c2h2final6 135 155 IPR013087 -
Cmo08g00317 485 SMART c2h2final6 59 81 IPR013087 -
Cmo08g00317 485 SMART c2h2final6 100 130 IPR013087 -
Cmo08g00317 485 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Cmo08g00317 485 SUPERFAMILY beta-beta-alpha zinc fingers 58 155 IPR036236 -
Cmo08g00317 485 MobiDBLite consensus disorder prediction 302 324 - -
Cmo08g00317 485 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 21 462 - -
Cmo08g00317 485 Gene3D Classic Zinc Finger 128 192 - -
Cmo08g00317 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 462 - -
Cmo08g00317 485 Gene3D Classic Zinc Finger 38 107 - -
Cmo08g00317 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00317 Cmo-Chr8:1974557 Cmo20g00655 Cmo-Chr20:3205336 4.70E-111 dispersed
Cmo01g01780 Cmo-Chr1:13151983 Cmo08g00317 Cmo-Chr8:1974557 8.68E-111 transposed
Cmo04g01048 Cmo-Chr4:5233890 Cmo08g00317 Cmo-Chr8:1974557 1.44E-104 transposed
Cmo17g01183 Cmo-Chr17:9502242 Cmo08g00317 Cmo-Chr8:1974557 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10231 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00317 K25870 - csv:101208253 659.062