Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00320 ATGGGCAACTCCGACTACGTGTATCCATCGGCGGCGACGGAGGGCGGCGGCGGCGAGTGTTTACACAGGGCGGCGATTCCACCGCCGCAGCCGTTCGTTAAGTCGCTGAAGAACTCTTTAAAGGAGACATTCTTCCCGGACGACCCACTACGGCAGTTCAAAAACCAACCGGCGGCGAGGAAAGTGCTGTTGGGTTTACAGTACTTTTTCCCGGTGTTGGAGTGGGGACCACGTTATCGTTTAGCGCTACTGAAATCGGATCTTATCTCCGGTATCACCATTGCTAGCCTCGCTATTCCTCAGGGGATTAGCTATGCCAAGTTGGCTAATTTACCCCCCATCCTCGGCCTTTATTCCAGTTTTATTCCGCCGCTGATTTATGCAATGATGGGAAGCTCTAAGGACTTGGCCGTCGGAACCGTGGCGGTAGCGTCGCTTCTCATTAGCGCGATGTTAGGGGCCGAGGTTAGCCCCGCTCAAAACCCAACTCTTTACCTCCATCTCGCGTTCACCGCCACGTTCTTTGCCGGAGTCTTTCAAGCCTCTTTAGGCCTATTGAGACTAGGGTTCATCGTGGATTTCCTGTCACATGCCACCATAGTTGGGTTCATGGCGGGTGCAGCCACAGTGGTGTGCTTACAGCAGCTGAAAGGCATCCTTGGGCTAACCCATTTCACTCACGCGACTGATCTCGTCTCGGTTCTCCGCTCCGTTTTTAGTCAAGTCGATCAGTGGAGATGGGAAAGTGGAGTATTGGGATGTTGTTTTCTCTTCTTCCTGCTCGTCACCAGATATTTTAGCAAGAAAAAGCCGAAGTTCTTTTGGATATCAGCAATGGCACCTTTGACGTCGGTAATTTTGGGAAGTCTTCTAGTGTTTCTCACTCATGCGGAAAAACACGGCGTTGAAGTGATCGGTGAATTGAAGAAAGGGCTAAATCCAGTGTCGATTACCGATTTAGTGATGGTGTCGCCTCATCTTTCCATCGCTATTAAAACTGGCATCATCACGGGTGTCATTGCTCTAGCGGAAGGAATAGCAGTTGGAAGAAGCTTTGCGATGTTCAAGCATTACAACATCGATGGCAACAAGGAAATGGTAGCCATTGGCACCATGAACATGGTCGGCTCTTGCTTCTCTTGCTATCTCACCACTGGCCCGTTTTCCCGATCGGCCGTGAATTTCAATGCAGGATGCAAAACCGCGGTTTCCAACGTGGTAATGGCCATTGCTGTGATGTTGACGCTGCTGTTTTTGACTCCTCTGTTTCATTACACGCCTCTGGTCGTGCTTTCTTCCATTATCATTTCCGCCATGCTTGGTCTCATCGATTACGACGCCGCTATTCACTTGTGGAAAGTCGATAAGTTCGATTTCCTTGTCTGTATTGGTGCTTATGCTGGTGTCGTCTTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGGTGGCTATATCGCTGCTCAGACTACTTTTGTTCGTCGCAAGGCCGAGGACGCTTGTGCTCGGAAACCTTCCTAATTCCACTGTTTACAGGAATGTCGAGCAATACCCGAATGCTGGGAATGTTCCCGGCATTCTCATACTCGAGATCGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGACAGGATAAAGGCTTCAGGAGATAGTACCTTACAATATGTCGTATTAGACATGAGTGCTGTTGGAAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAAGATTTTAGACAGAAGGGGGTTGAAGATAGTTTTGGCGAACCCGGGAGCTGAGGTGATGAAGAAGCTGGACAAGGGGAAGTTCATTGAGAGCCTGGGACACGAATGGATCTATCTTACGGTGGCTGAAGCTGTAGCAGCCTGCAACTATATGCTTCACTCTTGCAAACCAAACCCTGAAACTGATGAGAAAACAGAAGCATGGAACAGTGTGTAA 1986 48.84 MGNSDYVYPSAATEGGGGECLHRAAIPPPQPFVKSLKNSLKETFFPDDPLRQFKNQPAARKVLLGLQYFFPVLEWGPRYRLALLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLISAMLGAEVSPAQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFSQVDQWRWESGVLGCCFLFFLLVTRYFSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITDLVMVSPHLSIAIKTGIITGVIALAEGIAVGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNFNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIAVAISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNAGNVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGDSTLQYVVLDMSAVGNIDTSGISMFEEIKKILDRRGLKIVLANPGAEVMKKLDKGKFIESLGHEWIYLTVAEAVAACNYMLHSCKPNPETDEKTEAWNSV 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1996246 2000816 + CmoCh08G003200.1 Cmo08g00320 387053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00320 661 TIGRFAM sulP: sulfate permease 71 634 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo08g00320 661 Gene3D STAS domain 495 641 IPR036513 -
Cmo08g00320 661 ProSiteProfiles STAS domain profile. 515 638 IPR002645 -
Cmo08g00320 661 Pfam STAS domain 516 634 IPR002645 -
Cmo08g00320 661 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 655 - -
Cmo08g00320 661 ProSitePatterns SLC26A transporters signature. 113 134 IPR018045 GO:0008271|GO:0008272
Cmo08g00320 661 PANTHER SULFATE TRANSPORTER 2 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo08g00320 661 Pfam Sulfate permease family 84 463 IPR011547 GO:0016021
Cmo08g00320 661 CDD STAS_SulP_like_sulfate_transporter 516 631 - -
Cmo08g00320 661 SUPERFAMILY SpoIIaa-like 522 639 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00320 Cmo-Chr8:1996246 Cmo08g00647 Cmo-Chr8:4222627 0 dispersed
Cmo14g01779 Cmo-Chr14:13719051 Cmo08g00320 Cmo-Chr8:1996246 1.18E-35 wgd
Cmo17g01178 Cmo-Chr17:9479063 Cmo08g00320 Cmo-Chr8:1996246 0 wgd
Cmo06g01389 Cmo-Chr6:10193827 Cmo08g00320 Cmo-Chr8:1996246 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00320 K17471 - csv:101222260 1214.52