Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00324 ATGGATTTAGTAAATGCGGGCGAGGCCAGTGATGCTCCGGCGGGTAAGAACTCCGGTAATCAAGTGGCGGACATTGTTTCCGGTAAGACTAGTAATCCCGGAGAGAAGGATCTGGGTTCAAAATTGGAGACAGGAAGCAAAAGCAGTAAGGATATGGTTTTTCGAGCGGATAAGATTGATTTCAAGAATTGGGATATTCAGCTGGACAAGCACTTGAGCAGGGCTTGGTCGAGGGACAGGGAAGTGCCTGCCAAAAAGGAAGAATGGGAGATTGACTTGTCTAAACTTGATATCAGATACGTCAAAGCTCATGGAACTTTTGGTACCATTTACAGAGGAAATTATGATGGCAATGATGTTGCAGTGAAAGTGCTTGATTGGGGGGAGGACGGTGTCTCCTCAGTCGCTGAAATTGCTGCTCTTCGAACATCTTTTCGCCAGGAAGTTGCTGTTTGGCATAAGCTTGACCATCCCAATGTTGCAAAGTTTTTTGGAGCATCAATGGGGACGTACAACCTTAAAATCCCTTCACAAAACTCATCAAGTGATGGTAACCAATCTTTTCCTTCAAGGGCTTGCTGCGTTGTTGTTGAGTATCTTCCAGGAGGAACACTAAAGGGATTTTTAATAAAAAATAGGAAAAAGAAACTTGCACTTAAGGTTGTAATTCAACTTGTTTTGGATCTTTCTAGAGGTTTGAGCTATCTACACTCCAAAAAGATTGTACACCGTGATATCAAAACAGAAAATGTGCTGCTAGATGCTCAGAAGACTCTGAAAATCGTTGATTTTGGCGTCGCCCGAGTCGAAGCACAGAACCCAAGGGATATGACTGGAGAGACTGGCACCCTTGGTTACATGGCCCCAGAGGTCCTTGATGGCAAGCCTTATAATCGTAAATGTGATGTGTATAGTTTTGGTATATGTTTGTGGGAAACATATTGTTGCGATATGCCTTACCCAGATCTCAGTTTTGCTGAAGTCTCATCTGCAGTTGTGCAGCAGGTTGTGACTTTTCATTCTTCACACCATAAATATAAACACTCTTTGCAACAGAATTTACGACCAGAAATCCCTCGATGTTGCCCGAGTTCCTTGGCAAATATCATGAGAAGATGTTGGGATGCAAATCCAGAAAGGCGACCTGACATGGATGAGGTTGTAAAATTGTTGGAAGCCATTGATACAAGCAAGGGAGGTGGCATGATACCCGAAGACCAGGCATCTCGTTGTTTCTGCTTCGGCAAGCCTCGTGGTCCTTAG 1263 43.94 MDLVNAGEASDAPAGKNSGNQVADIVSGKTSNPGEKDLGSKLETGSKSSKDMVFRADKIDFKNWDIQLDKHLSRAWSRDREVPAKKEEWEIDLSKLDIRYVKAHGTFGTIYRGNYDGNDVAVKVLDWGEDGVSSVAEIAALRTSFRQEVAVWHKLDHPNVAKFFGASMGTYNLKIPSQNSSSDGNQSFPSRACCVVVEYLPGGTLKGFLIKNRKKKLALKVVIQLVLDLSRGLSYLHSKKIVHRDIKTENVLLDAQKTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYPDLSFAEVSSAVVQQVVTFHSSHHKYKHSLQQNLRPEIPRCCPSSLANIMRRCWDANPERRPDMDEVVKLLEAIDTSKGGGMIPEDQASRCFCFGKPRGP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2028972 2032619 + CmoCh08G003240.1 Cmo08g00324 387057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00324 420 SUPERFAMILY Protein kinase-like (PK-like) 83 392 IPR011009 -
Cmo08g00324 420 Pfam Protein tyrosine and serine/threonine kinase 104 391 IPR001245 GO:0004672|GO:0006468
Cmo08g00324 420 SMART serkin_6 96 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00324 420 PANTHER KINASE ATMRK1, PUTATIVE-RELATED 36 412 - -
Cmo08g00324 420 MobiDBLite consensus disorder prediction 1 45 - -
Cmo08g00324 420 Gene3D Phosphorylase Kinase; domain 1 84 178 - -
Cmo08g00324 420 MobiDBLite consensus disorder prediction 14 28 - -
Cmo08g00324 420 ProSiteProfiles Protein kinase domain profile. 96 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00324 420 Gene3D Transferase(Phosphotransferase) domain 1 202 406 - -
Cmo08g00324 420 CDD STKc_MAP3K-like 103 391 - -
Cmo08g00324 420 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 36 412 - -
Cmo08g00324 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00324 Cmo17g01175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00324 Cmo-Chr8:2028972 Cmo11g01694 Cmo-Chr11:11996809 0 dispersed
Cmo14g01770 Cmo-Chr14:13686586 Cmo08g00324 Cmo-Chr8:2028972 1.21E-143 wgd
Cmo17g01175 Cmo-Chr17:9450541 Cmo08g00324 Cmo-Chr8:2028972 0 wgd
Cmo06g01395 Cmo-Chr6:10228553 Cmo08g00324 Cmo-Chr8:2028972 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74519 PF07714 PK_Tyr_Ser-Thr 1.60E-53 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00324 - - mcha:111018484 730.324