Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00360 ATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTCTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGTTACGAGGGTCGATCAGTTGAAGGAACTGGCTCAATTGCTTGAGGCTGAATGTGTAGTACCTCTGGTTGTTGCAATTTCTGGGAGAGTAAGCTCTGATACACCAATAAATTGCGAGTTTAGTGGGCTGCGGGGAGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTGAAGCACAACGATGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTACCAGTAGTGAGTGAGATATTTGAAGAGTCTGGCAGATCTCTTATGCGTGGAACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCAACTGGCACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGACATTGGTACGATTAGAATACAACGACCACACAAAGGGCCATTTTATGTCTCCCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCCTGGGTTTGAGCATATTTGGTTTGTATCTCGTCACAAAGCATGCTATTCTTTATCTCTTGGGGAGAAGGCGTCGCTGGAAATATCAGAAAAGGGTCCTAGCTGCAGCTGCCAAGAGATCAAACCAAGAAAATGAAGGGGAAAATGGTACGACTAACAATGGCTCAGATGGTACGAAGAGAGACCGTTCAATGCCAGATCTTTGTGTAATATGTCTTGAGAGAGACTACAACGCCGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCGTGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTCGACGAATTGAGCTAGTAGTAAAGACATACCGCCATTGA 1029 45.97 MLPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAECVVPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSATNFILPVVSEIFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASLGLSIFGLYLVTKHAILYLLGRRRRWKYQKRVLAAAAKRSNQENEGENGTTNNGSDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTYRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2232197 2240856 + CmoCh08G003600.1 Cmo08g00360 387093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00360 342 CDD RING-HC_LRSAM1 294 333 - -
Cmo08g00360 342 PANTHER - 1 309 IPR044231 GO:0004842|GO:0016567
Cmo08g00360 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 341 IPR013083 -
Cmo08g00360 342 SUPERFAMILY RING/U-box 294 336 - -
Cmo08g00360 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Cmo08g00360 342 MobiDBLite consensus disorder prediction 266 287 - -
Cmo08g00360 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Cmo08g00360 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 335 - -
Cmo08g00360 342 MobiDBLite consensus disorder prediction 268 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00360 Cmo-Chr8:2232197 Cmo08g00768 Cmo-Chr8:4844330 2.94E-15 dispersed
Cmo14g01705 Cmo-Chr14:13384774 Cmo08g00360 Cmo-Chr8:2232197 5.14E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00360 K15688 - csv:101218196 624.78