Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo08g00360 | ATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTCTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGTTACGAGGGTCGATCAGTTGAAGGAACTGGCTCAATTGCTTGAGGCTGAATGTGTAGTACCTCTGGTTGTTGCAATTTCTGGGAGAGTAAGCTCTGATACACCAATAAATTGCGAGTTTAGTGGGCTGCGGGGAGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTGAAGCACAACGATGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTGGGAGCTCGAAGTGCCACAAATTTTATATTACCAGTAGTGAGTGAGATATTTGAAGAGTCTGGCAGATCTCTTATGCGTGGAACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCAACTGGCACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGACATTGGTACGATTAGAATACAACGACCACACAAAGGGCCATTTTATGTCTCCCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCCTGGGTTTGAGCATATTTGGTTTGTATCTCGTCACAAAGCATGCTATTCTTTATCTCTTGGGGAGAAGGCGTCGCTGGAAATATCAGAAAAGGGTCCTAGCTGCAGCTGCCAAGAGATCAAACCAAGAAAATGAAGGGGAAAATGGTACGACTAACAATGGCTCAGATGGTACGAAGAGAGACCGTTCAATGCCAGATCTTTGTGTAATATGTCTTGAGAGAGACTACAACGCCGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCGTGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTCGACGAATTGAGCTAGTAGTAAAGACATACCGCCATTGA | 1029 | 45.97 | MLPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAECVVPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSATNFILPVVSEIFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASLGLSIFGLYLVTKHAILYLLGRRRRWKYQKRVLAAAAKRSNQENEGENGTTNNGSDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTYRH | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 2232197 | 2240856 | + | CmoCh08G003600.1 | Cmo08g00360 | 387093 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo08g00360 | 342 | CDD | RING-HC_LRSAM1 | 294 | 333 | - | - | |
Cmo08g00360 | 342 | PANTHER | - | 1 | 309 | IPR044231 | GO:0004842|GO:0016567 | |
Cmo08g00360 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 262 | 341 | IPR013083 | - | |
Cmo08g00360 | 342 | SUPERFAMILY | RING/U-box | 294 | 336 | - | - | |
Cmo08g00360 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 295 | 330 | IPR001841 | - | |
Cmo08g00360 | 342 | MobiDBLite | consensus disorder prediction | 266 | 287 | - | - | |
Cmo08g00360 | 342 | Pfam | E3 Ubiquitin ligase | 86 | 235 | IPR022170 | GO:0004842|GO:0006996|GO:0016567 | |
Cmo08g00360 | 342 | Pfam | Zinc finger, C3HC4 type (RING finger) | 293 | 335 | - | - | |
Cmo08g00360 | 342 | MobiDBLite | consensus disorder prediction | 268 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00360 | Cmo-Chr8:2232197 | Cmo08g00768 | Cmo-Chr8:4844330 | 2.94E-15 | dispersed | |
Cmo14g01705 | Cmo-Chr14:13384774 | Cmo08g00360 | Cmo-Chr8:2232197 | 5.14E-06 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo08g00360 | K15688 | - | csv:101218196 | 624.78 |