Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00401 ATGAGGAGAAAATCCAAAACCCTAAGAACGACGATGACCGCAACGAGGAAGAAGATGAAAGGGACATTGACGAGGCACTTGCAGGTCCAGTTAGGGCAGGTTTCTCTTGCTCCTCTCCACCACCAACGCTCTTCTTCCACCGCCGCTTGCTTCCAAGACTTGCCTGAATCTGAAGCAATGGCGACGGTCAACGATTCTGGCGCTCTCCCTTCCTCGTCTACTAACTTTGAGGACAGAGATTTCATTCTTAGTCAGGATTTCTTCTGCACCCCTGACTATATCACTCCGGACAACCAAAATCTGCTGAATGGCGTGGATTGCTACAAGGAAAGCACCCCTTGCCCCAAGTCTCCAGAGAAGATTAATACTGTTAAAACTAAGAGAAAAATACGTGACGGTGTTTTAGTACATCCTCTGAGTCCAAGTTTGTCTGGCCGTGAACAAGTTGTGGAGCTAGGAAATGACACTTTTGGAACAGATGATGAAGATATGGAGAAAGAGACAATGGCAATGCCAAAGAAACAAAACTATGTTTCTCAATCTGCTGTTGCTTTACGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAATCCATACTTGAATGATGCTTCAGACATAGGTGTAGACCCATTTGGTAATCAACGAACAAAATGTGCAGATTTTTTTCCCGCACTGTTTAGTGGAGATGGTCTTTCAAGATACCACACCGATTTTCATGAGATAAAGCAAATAGGAACTGGAAATTTTAGCCGTGTTTTCAAGGTATTGAAGAGAATTGATGGTTGCTTATATGCTGTTAAACAAAGCACAAGACCATTGCATCAAGACATAGAAAGGAGGAGAGCTTTGATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAAAACATCGTTGGATACTACTCTTCCTGGTTTGAAAATGAGCAACTCTACATTCAAATGGAACTCTGTGATTGTAGTTTATCCACTGGCAGGTATTCTCACCCGTTCTCTGAGGCTGATGCACTGAAAGCCTTGCATCAGATTGCAAAAGCATTGCTGTTTATGCACGAGAAAGGAGTAGTTCATTTAGACGTGAAACCTGACAATATTTATGTCAAAGATGGTGTTTATAAACTTGGTGACTTTGGGTGCGCTACTCTTCTTGATAAAAGCCTACCAATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAGATTCTGAATGAGAGATACGATTATCTTGACAAGGTTGATATATTCTCTTTGGGAGCTGCTATTTATGAGGTTGTGAGAGGTTCGACATTTCCAGAAACACATTTCATGAATCTAAAGGAGGGAAAATTGCCACTCTTTCCCTGTCATTCATTGCAATTTCAAAACTTAATCAAGGCGATGGTGGATCCCGACCCAGCACGACGGCCTTCAGCAAGGGAAGTTCTTCAGAATCCCATATTTGATAAGCCTGCTATTTTTGTAAGATTTCAATCACCACTTTCCCAAGTTCATGCACCAAATTTTGTCTCTAGCATGGTGCAAAATCTGTAA 1530 42.48 MRRKSKTLRTTMTATRKKMKGTLTRHLQVQLGQVSLAPLHHQRSSSTAACFQDLPESEAMATVNDSGALPSSSTNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDCYKESTPCPKSPEKINTVKTKRKIRDGVLVHPLSPSLSGREQVVELGNDTFGTDDEDMEKETMAMPKKQNYVSQSAVALRCRVMPPPCMKNPYLNDASDIGVDPFGNQRTKCADFFPALFSGDGLSRYHTDFHEIKQIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLHQDIERRRALMEVQALAALGSHENIVGYYSSWFENEQLYIQMELCDCSLSTGRYSHPFSEADALKALHQIAKALLFMHEKGVVHLDVKPDNIYVKDGVYKLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEVVRGSTFPETHFMNLKEGKLPLFPCHSLQFQNLIKAMVDPDPARRPSAREVLQNPIFDKPAIFVRFQSPLSQVHAPNFVSSMVQNL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2491064 2495011 - CmoCh08G004010.1 Cmo08g00401 387134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00401 509 SMART serkin_6 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00401 509 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Cmo08g00401 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 409 482 - -
Cmo08g00401 509 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 19 396 - -
Cmo08g00401 509 Gene3D Phosphorylase Kinase; domain 1 228 316 - -
Cmo08g00401 509 SUPERFAMILY Protein kinase-like (PK-like) 231 508 IPR011009 -
Cmo08g00401 509 PANTHER BNAA08G27310D PROTEIN 409 482 - -
Cmo08g00401 509 Pfam Protein kinase domain 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00401 509 ProSiteProfiles Protein kinase domain profile. 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00401 509 PANTHER BNAA08G27310D PROTEIN 19 396 - -
Cmo08g00401 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Cmo08g00401 509 Gene3D Transferase(Phosphotransferase) domain 1 317 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00401 Cmo-Chr8:2491064 Cmo06g00611 Cmo-Chr6:3014576 6.99E-22 dispersed
Cmo17g01084 Cmo-Chr17:8965554 Cmo08g00401 Cmo-Chr8:2491064 9.58E-18 dispersed
Cmo08g00401 Cmo-Chr8:2491064 Cmo16g01258 Cmo-Chr16:8970864 2.58E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74520 PF00069 Pkinase 3.60E-49 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00401 K06632 - csv:101213255 858.211