Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00431 ATGGCGGCCACCACATTCACCTCTCTCATCCTCCTCACCCTCTACATAACCACCGCTCAAATTCCCCTCTCCGCCGCCGCCGCCTCCGTCTGCACCTCCACCCCCGACCCCTCCTACTGCAAATCCACCCTCCCCAACCAAACCGGCAATGTCTATTCATACGGCCGCTCATCTTTCAGAAAATCCCTCTCATCCTCGCAAAAGTTTCTCCGGCTAGTCAAAAAGTACCTCCGGTCACGCTCGTCGTTGACCGTCCCCGCCGTCCGAGCGCTGGAGGACTGCCAGCTGTTGGCGGGACTGAATATTGATTACTTAACGACGTCGTTCCGGACGGTGAATACGACGAGTTCAAAGCTGTCGGAGATGAAGGCGGACGACGTACAGAGCTTGTTGAGTGCGATATTGACGAACCAGCAGACGTGTTTGGATGGGCTCAAGGCGACGGCGGGTTCGTGGTCCGTCAAAAATGGCCTTTCCCTCCCACTTGCCTCTGACACCAAGCTGTACTCTATGTCCTTGGCTTTATTTACCAAAGGTTGGGTTCCGAAGAAGAAGAAACGGTCGACATGGACGGCGGCCGGGAGGCAGGGCGGGTTTAGAAACGGTCGGATGTCACTCAAAATGTCGAACAGAGCGAAAGCGATTTACGAGATGGCGACGCGCCGGAATCTGCTGGAGACTGACGACGGCGGCGACGACCAGATTTCGATCAGAGACATCGTCATTGTCAGCCAAGACGGCAGCGGGAATTTCACGACAATTAACGAAGCGATTGCGGCGGCGCCGAATAACTCTGCTCCGACCGACGGCTATTTCTTAATCTTTGTGTCGGTCGGAGTTTACGAGGAATACGTGTCGATTGCGAAGAATAAACGGTATTTGATGATGATCGGAGATGGTATTAATCAGACCGTTATCACTGGTAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACGTTTGCGGTGGTGGGACCCGGATTTGTAGCGGTGAACATGACGTTCAGAAACACCGCCGGAGCAATAAAGCACCAAGCCGTCGCCGTCCGTAACGGCGCCGACTTATCCACTTTCTACCTCTGCAGCTTCGAAGGCTACCAAGACACCTTATACACACACTCCCTCCGCCAATTTTACCGCGACTGCGACATTTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTTTTCCAGAACTGCAACATCTACCCTCGTCTTCCTATGGCGAACCAGTTCAACGCCATCACTGCTCAGGGCCGGACCGACCCAAATCAGAACACCGGAACCTCGATCCATAACTGCCGGATCACCGCCGCTGACGACCTCGCGAACAACACCGGCGTCGCGGTGAAAACGTTCCTCGGACGACCGTGGAAGGAGTATTCAAGGACGGTGTATTTGCAGAGCTTCATGGATGAGCTAATTAATCCGGCGGGGTGGAGGGCTTGGGATAAGGATTTTGCTTTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTGAATTGGCTGGGATTTCATTTGATTAATGATACCGATGCTGGGAATTTCACGGCGGCGAACTTTGTCTTGGCGGATGATTGGCTGCCGCAGACCGGCGTTCCGTACACCAGCGGCTTGACGGAGTAG 1671 54.4 MAATTFTSLILLTLYITTAQIPLSAAAASVCTSTPDPSYCKSTLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVKKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRTVNTTSSKLSEMKADDVQSLLSAILTNQQTCLDGLKATAGSWSVKNGLSLPLASDTKLYSMSLALFTKGWVPKKKKRSTWTAAGRQGGFRNGRMSLKMSNRAKAIYEMATRRNLLETDDGGDDQISIRDIVIVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVSVGVYEEYVSIAKNKRYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEGYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANNTGVAVKTFLGRPWKEYSRTVYLQSFMDELINPAGWRAWDKDFALNTSYYAEFGNFGPGSNTSERVNWLGFHLINDTDAGNFTAANFVLADDWLPQTGVPYTSGLTE 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2675526 2677462 + CmoCh08G004310.1 Cmo08g00431 387164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00431 556 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Cmo08g00431 556 PANTHER PECTINESTERASE 17 554 - -
Cmo08g00431 556 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Cmo08g00431 556 Gene3D - 235 554 IPR012334 -
Cmo08g00431 556 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
Cmo08g00431 556 CDD PMEI-like_3 29 180 - -
Cmo08g00431 556 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 178 IPR035513 -
Cmo08g00431 556 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Cmo08g00431 556 SMART PMEI_2 22 175 IPR006501 GO:0004857
Cmo08g00431 556 Pfam Pectinesterase 241 539 IPR000070 GO:0030599|GO:0042545
Cmo08g00431 556 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 17 554 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00608 Cmo-Chr2:3762699 Cmo08g00431 Cmo-Chr8:2675526 0 dispersed
Cmo08g00431 Cmo-Chr8:2675526 Cmo20g01147 Cmo-Chr20:11262277 0 dispersed
Cmo01g01688 Cmo-Chr1:12715396 Cmo08g00431 Cmo-Chr8:2675526 0 transposed
Cmo17g01038 Cmo-Chr17:8815401 Cmo08g00431 Cmo-Chr8:2675526 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00431 K01051 - csv:101205321 989.564