Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00433 ATGGCTACCGACTCTCATTCCCCTACTCCGAGGGCTCTTCTCTGTAATGCTGGAGCTGGTGCCGCTGCTGGAGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTTATTAAGACTAGATTTCAGGTTCATGGACTGCCAAACATTGGAAAAGGGAGTCTCATACTTGGTAGTCTGAAACAAATTGCTCATGCGGAGGGGCTGCGTGGAATGTATAGAGGACTCTCACCTACTGTGCTTGCACTACTTCCTAACTGGGCTGTTTATTTCACAATCTATGAACAGCTTAAATGTTTTCTTGGCTCTGATGATGAAAGGCATCAGCTTTCAATAGGTGCTAATATGTTGGCTGCATCTGGTGCTGGGGCTGCTACAGCTATTGCAACTAATCCTCTATGGGTTGTTAAGACCAGACTTCAGACGCAGGGAATGAAGTCTGGTGTCCTACCGTATAGAAACACAGTTTCTGCCTTGAAGAGAATAGCCTATGAAGAAGGCATCCGTGGATTGTACAGTGGTCTTGTGCCTGCTCTGGCTGGTGTAAGTCACGTCGCGATCCAGTTTCCGACATACGAGAAAATAAAAAGCTATTTGGCTAGCAGAGATAATACGACGACGGATAAACTCTCCGCTCGTGACGTTGCAGTCGCCTCATCTGTCTCCAAGATATTCGCGTCCACATTGACTTATCCACATGAGGTTGTACGTTCCAGGCTTCAGGAACAAGGGTTCCACTCCGAGAAGCGTTATTCGGGCGTAACCGATTGCGTAAAGAAAGTGTTTCAGCAAGATGGTCTCCCCGGTTTCTATCGAGGGTGCGCGGCCAACCTTCTTAGGACGACGCCTGCAGCTGCCATCACATTTACCAGCTTTGAAATGATCCACCGTTCTCTTCTCAACTTATTTCCTTCTGATCCACACCAACACACATTATGA 936 47.54 MATDSHSPTPRALLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLILGSLKQIAHAEGLRGMYRGLSPTVLALLPNWAVYFTIYEQLKCFLGSDDERHQLSIGANMLAASGAGAATAIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALKRIAYEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLASRDNTTTDKLSARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVTDCVKKVFQQDGLPGFYRGCAANLLRTTPAAAITFTSFEMIHRSLLNLFPSDPHQHTL 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2683606 2686687 - CmoCh08G004330.1 Cmo08g00433 387166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00433 311 Pfam Mitochondrial carrier protein 16 101 IPR018108 -
Cmo08g00433 311 Pfam Mitochondrial carrier protein 215 299 IPR018108 -
Cmo08g00433 311 Pfam Mitochondrial carrier protein 108 199 IPR018108 -
Cmo08g00433 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Cmo08g00433 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Cmo08g00433 311 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085
Cmo08g00433 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Cmo08g00433 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085
Cmo08g00433 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Cmo08g00433 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 310 IPR044712 GO:0006862|GO:0055085
Cmo08g00433 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Cmo08g00433 311 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 310 - -
Cmo08g00433 311 SUPERFAMILY Mitochondrial carrier 14 293 IPR023395 -
Cmo08g00433 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
Cmo08g00433 311 Gene3D Mitochondrial carrier domain 11 300 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00433 Cmo17g01033 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00741 Cmo-Chr3:6282873 Cmo08g00433 Cmo-Chr8:2683606 2.73E-16 dispersed
Cmo08g00433 Cmo-Chr8:2683606 Cmo17g00306 Cmo-Chr17:1859215 2.00E-34 dispersed
Cmo15g00963 Cmo-Chr15:5025679 Cmo08g00433 Cmo-Chr8:2683606 7.04E-135 transposed
Cmo17g01033 Cmo-Chr17:8792819 Cmo08g00433 Cmo-Chr8:2683606 1.07E-141 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00433 K15115 - csv:101204681 534.643