Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo08g00436 | ATGGCGGTGGCGGCCGACAATATCAACGACGATGCTAGTGGTGGCGGCACAGCGGGGGACGTTGTGTCCACCGCAGCGGTTAAGTCTCTGTGTCAACCGACATCTTATCGCGAAACCTGCGAGAAAGTTCTGGTGAATGCAACCGGCGACTCAAAAGACCCACGAGACTTGATCAAGGCAGGATTCCATTATGCCGTTGATCAACTCAAATTGGCCATTGCAAATTCCCCCACTTTGAAAGAATCAGCTACTGACCCAATGGCTAAGCAAGCGGTTGATGCGTGCGAAGAGCTCATTGATCATGCAGTTGACGATCTTTTAACGTCATTTGATAAAGTCACCGATAGTTTTACTGTGAATAGAATCGATAATTATATTGAGACTCTTAGGCTTTGGTTGAGTGGCGCATTGACGTATCAAGAAACTTGTTTGGATGGCTTCAAGAATGTCCCTGGTGATACTGGGGAAAAGATGACCAATTTGTTGAAGACGTCTAGAGAAATAACCATCAATGGGTTGTCGATGGTGGGTGAGGTTACAGCCATTGTGACCTCTTTGTGGCGTGCATTGGGGCTTCAATGGGTTGTCGATGACGAGTACGATGAGGAAGAGCCATCATGGGTCGATGATAGGCGGGGGCTACTCCAAGCCACTGGCGCTAACGTTAACGCCGATCTGGTAGTGGCTAAAGATGGAAGTGGAAAGTATACGACAATCACTGAAGCTCTTCAAGAGGTCCCGAAGTTTAGCAATAAAACCTTTATTATTTATGTTAAGGAAGGAGTTTATGAAGAGCAAGTATTGGTTGACAAATCCATGACCTATGTCATGATGATTGGAGATGGCATGGATAAGACCAAGATCACTGGTAGCAAGAATTTCAAGGATGGAGTAAACACATTCAAAACTGCTACCGTTGCGGTGGATGGGGTCAACTTCATTGGAAAAGACTTATGGTTCGAGAATTCGGCTGGGGCTGAAAAACATCAGGCCGTGGCACTTCGAGTTCAATCCGACATGTCCATCTTCTACAATTGTAGAATGGATGGCTATCAAGATACTCTCTACGCCCACACTCATCGTCAATTCTACCGAGATTGCATCATCACTGGCACCATCGACTTCATCTTTGGCAACGCTGCTGTCGTGTTCCAGAATTCCGCCATGGCGGTGGCGGCCGACAATGTCAACGACAATGCTAGTGGTGGCAGCACAGCGGGGGACGTTGTGTCCACCGCAGCGGTTAAGTCTCTGTGTCAACCGACATCTTATCGCGAAACCTGCGAGAAAGTTCTGGTGAATGCAACCGGCGACTCAAAAGACCCACGAGACTTGATCAAGGCAGGATTCCATTATGCCGTTGATCAACTCAAATTGGCCATTGCAAATTCCCCCACTTTGAAAGAATCAGCTACTGACCCAATGGCTAAGCAAGCGGTTGATGCGTGCGAAGAGCTCATTGATCATGCAGTTGACGATCTTTTAACGTCATTTGATAAAGTCACCGATAGTTTTACTGTGAATAGAATCGATAATTATATTGAGACTCTTAGGCTTTGGTTGAGTGGCGCATTGACGTATCAAGAAACTTGTTTGGATGGCTTCAAGAATGTCCCTGGTGATACTGGGGAAAAGATGACCAATTTGTTGAAGACGTCTAGAGAAATAACCATCAATGGGTTGTCGATGGTGGGTGAGGTTACAGCCATTGTGACCTCTTTGTGGCGTGCATTGGGGCTTCAATCATTTGGGCGACAACTCCGAGTAGACGAGTACGATGAGGAAGAGCCATCATGGGTCGATGATAGGCGGGGGCTACTCCAAGCCACTGGCGCTAACGTTAACGCCGATCTGGTAGTGGCTAAAGATGGAAGTGGAAAGTATACGACAATCACTGAAGCTCTTCAAGAGGTCCCGAAGTTTAGCAATAAAACCTTTATTATTTATGTTAAGGAAGGAGTTTATGAAGAGCAAGTATTGGTTGACAAATCCATGACCTATGTCATGATGATTGGAGATGGCATGGATAAGACCAAGATCACTGGTAGCAAGAATTTCAAGGATGGAGTAAACACATTCAAAACTGCTACCGTTGCGGTGGATGGGGTCAACTTCATTGGAAAAGACTTATGGTTCGAGAATTCGGCTGGGGCTGAAAAACATCAGGCCGTGGCACTTCGAGTTCAATCCGACATGTCCATCTTCTACAATTGTAGAATGGATGGCTATCAAGATACTCTCTACGCCCACACTCATCGTCAATTCTACCGAGATTGCATCATCACTGGCACCATCGACTTCATCTTTGGCAACGCTGCTGTCGTGTTCCAGAATTGTAAGATCTTAGTGAGGAAGCCATTAGAGAATCAACAATGCATTGTCACTGCCCAAGGCCGAACCGAGAGGAAAGAGCCCACCGGTATCGTACTCCAGAACTGCGTCATCTCTTCCGACCCTGAGTACTTTCCTGTTCGCCATATCAGCAAGTCCTACCTCGGCCGTCCATGGAAGGAATACTCAAGAACCATCATCATGCAATGCCAAATCGATGACTTGATACAGCCTGAAGGGTGGCTTCCATGGGAAGCCGATTTTGGTCTCAAGACTCTGTTTTACTCAGAGTTCGAAAATAGGGGACCTGGTGCAGCAACGCAGAATCGAGTTAAGTGGAGGGGAATTAAACAAATCTCAGCAAAGCACGCCCTTGACTTCACCCCTGCATTCTTTATTCATGGTAATAGTTGGATCAAGCGCACTGGAGTACCATATAGTCCGGGCATGATGGTAGTGTAA | 2793 | 46.62 | MAVAADNINDDASGGGTAGDVVSTAAVKSLCQPTSYRETCEKVLVNATGDSKDPRDLIKAGFHYAVDQLKLAIANSPTLKESATDPMAKQAVDACEELIDHAVDDLLTSFDKVTDSFTVNRIDNYIETLRLWLSGALTYQETCLDGFKNVPGDTGEKMTNLLKTSREITINGLSMVGEVTAIVTSLWRALGLQWVVDDEYDEEEPSWVDDRRGLLQATGANVNADLVVAKDGSGKYTTITEALQEVPKFSNKTFIIYVKEGVYEEQVLVDKSMTYVMMIGDGMDKTKITGSKNFKDGVNTFKTATVAVDGVNFIGKDLWFENSAGAEKHQAVALRVQSDMSIFYNCRMDGYQDTLYAHTHRQFYRDCIITGTIDFIFGNAAVVFQNSAMAVAADNVNDNASGGSTAGDVVSTAAVKSLCQPTSYRETCEKVLVNATGDSKDPRDLIKAGFHYAVDQLKLAIANSPTLKESATDPMAKQAVDACEELIDHAVDDLLTSFDKVTDSFTVNRIDNYIETLRLWLSGALTYQETCLDGFKNVPGDTGEKMTNLLKTSREITINGLSMVGEVTAIVTSLWRALGLQSFGRQLRVDEYDEEEPSWVDDRRGLLQATGANVNADLVVAKDGSGKYTTITEALQEVPKFSNKTFIIYVKEGVYEEQVLVDKSMTYVMMIGDGMDKTKITGSKNFKDGVNTFKTATVAVDGVNFIGKDLWFENSAGAEKHQAVALRVQSDMSIFYNCRMDGYQDTLYAHTHRQFYRDCIITGTIDFIFGNAAVVFQNCKILVRKPLENQQCIVTAQGRTERKEPTGIVLQNCVISSDPEYFPVRHISKSYLGRPWKEYSRTIIMQCQIDDLIQPEGWLPWEADFGLKTLFYSEFENRGPGAATQNRVKWRGIKQISAKHALDFTPAFFIHGNSWIKRTGVPYSPGMMVV | 930 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 2704680 | 2710153 | - | CmoCh08G004360.1 | Cmo08g00436 | 387169 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo08g00436 | 930 | Pfam | Pectinesterase | 617 | 913 | IPR000070 | GO:0030599|GO:0042545 | |
| Cmo08g00436 | 930 | Pfam | Pectinesterase | 225 | 394 | IPR000070 | GO:0030599|GO:0042545 | |
| Cmo08g00436 | 930 | Pfam | Plant invertase/pectin methylesterase inhibitor | 414 | 549 | IPR006501 | GO:0004857 | |
| Cmo08g00436 | 930 | Pfam | Plant invertase/pectin methylesterase inhibitor | 26 | 161 | IPR006501 | GO:0004857 | |
| Cmo08g00436 | 930 | SMART | PMEI_2 | 410 | 563 | IPR006501 | GO:0004857 | |
| Cmo08g00436 | 930 | SMART | PMEI_2 | 22 | 175 | IPR006501 | GO:0004857 | |
| Cmo08g00436 | 930 | PANTHER | PECTINESTERASE | 19 | 392 | - | - | |
| Cmo08g00436 | 930 | PANTHER | PECTINESTERASE | 390 | 927 | - | - | |
| Cmo08g00436 | 930 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 21 | 179 | IPR035513 | - | |
| Cmo08g00436 | 930 | CDD | PMEI-like_3 | 29 | 176 | - | - | |
| Cmo08g00436 | 930 | SUPERFAMILY | Pectin lyase-like | 222 | 395 | IPR011050 | - | |
| Cmo08g00436 | 930 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 417 | 567 | IPR035513 | - | |
| Cmo08g00436 | 930 | PANTHER | PECTINESTERASE | 19 | 392 | - | - | |
| Cmo08g00436 | 930 | PANTHER | PECTINESTERASE | 390 | 927 | - | - | |
| Cmo08g00436 | 930 | ProSitePatterns | Pectinesterase signature 2. | 369 | 378 | IPR033131 | - | |
| Cmo08g00436 | 930 | ProSitePatterns | Pectinesterase signature 2. | 761 | 770 | IPR033131 | - | |
| Cmo08g00436 | 930 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 414 | 565 | IPR035513 | - | |
| Cmo08g00436 | 930 | CDD | PMEI-like_3 | 417 | 564 | - | - | |
| Cmo08g00436 | 930 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 22 | 170 | IPR006501 | GO:0004857 | |
| Cmo08g00436 | 930 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 409 | 558 | IPR006501 | GO:0004857 | |
| Cmo08g00436 | 930 | Gene3D | - | 221 | 416 | IPR012334 | - | |
| Cmo08g00436 | 930 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 26 | 177 | IPR035513 | - | |
| Cmo08g00436 | 930 | SUPERFAMILY | Pectin lyase-like | 614 | 926 | IPR011050 | - | |
| Cmo08g00436 | 930 | Gene3D | - | 611 | 927 | IPR012334 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g01534 | Cmo-Chr6:10858549 | Cmo08g00436 | Cmo-Chr8:2704680 | 0 | dispersed | |
| Cmo08g00436 | Cmo-Chr8:2704680 | Cmo08g00437 | Cmo-Chr8:2725138 | 0 | tandem | |
| Cmo06g01523 | Cmo-Chr6:10823744 | Cmo08g00436 | Cmo-Chr8:2704680 | 2.86E-98 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo08g00436 | K01051 | - | csv:101212686 | 787.719 |