Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00437 ATGGCGGTGGCGGCCGACAATGTCAACGACAATGCTAGTGGTGGCAGCACAGCGGGGGACGTTGTGTCCACAGCAGCGGTTAAGTCCCTGTGTCAACCGACATCTTATCGCGAAACCTGCGAGAAAGTTCTGGTGAATGCAACCGGCGACTCAAAAGACCCACGAGACTTGATCAAGGCAGGATTCCATTATGCCGTTGATCAACTCAAATTGGCCATTGCAAATTCCCCCACTTTGAAAGAATCAGCTACTGACCCAATGGCTAAGCAAGCGGTTGATGCGTGCGAAGAGCTCATTGATCATGCAGTTGACGATCTTTTAACGTCATTTGATAAAGTCACCGATAGTTTTACTGTGAATAGAATCGATAATTATATTGAGACTCTTAGGCTTTGGTTGAGTGGCGCATTGACGTATCAAGAAACTTGTTTGGATGGCTTCAAGAATGTCCCTGGTGATACTGGGGAAAAGATGACCAATTTGTTGAAGACGTCTAGAGAAATAACCATCAATGGGTTGTCGATGGTGGGTGAGGTTACAGCCATTGTGACCTCTTTGTGGCGTGCATTGGGGCTTCAATCATTTGGGCGACAACTCCGAGTAGACGAGTACGATGAGGAAGAGCCATCATGGGTCAATGATAGGCGGGGGCTACTCCAAGCCACTGGCGCTAACGTTAACGCCGATCTGGTAGTGGCTAAAGATGGAAGTGGAAAGTATACGACAATCACTGAAGCTCTTCAAGAGGTCCCGAAGTTTAGCAATAAAACCTTTATTATTTATGTTAAGGAAGGAGTTTATGAAGAGCAAGTATTGGTTGACAAATCCATGACCTATGTCATGATGATTGGAGATGGCATGGATAAGACCAAGATCACTGGTAGCAAGAATTTCAAGGATGGAGTAAACACATTCAAAACTGCTACCGTTGCGGTGGATGGGGTCAACTTCATTGGAAAAGACTTATGGTTCGAGAATTCGGCTGGGGCTGAAAAACATCAGGCCGTGGCACTTCGAGTTCAATCCGACATGTCCATCTTCTACAATTGTAGAATGGATGGCTATCAAGATACTCTCTACGCCCACACCCATCGTCAATTCTACCGAGATTGCATCATCACTGGCACCATCGACTTCATCTTTGGCAACGCTGCTGTCGTGTTCCAGAATTGTAAGATCTTAGTGAGGAAGCCATTAGAGAATCAACAATGCATTGTCACTGCCCAAGGCCGAACCGAGAGGAAAGAGCCCACCGGTATCGTACTCCAGAACTGCGTCATCTCTTCCGACCCTGAGTACTTTCCTGTTCGCCATATCAGCAAGTCCTACCTCGGCCGTCCATGGAAGGAATACTCAAGAACCATCATCATGCAATGCCAAATCGACGACTTGATACAGCCTGAAGGGTGGCTTCCATGGGAAGCCGATTTTGGTCTCAAGACTCTGTTTTACTCAGAGTTCGAAAATAGGGGACCTGGTGCAGCAACGCAGAATCGAGTTAAGTGGAGGGGAATTAAACAAATCTCAGCAAAGCACGCCCTTGACTTCACCCCTGCCTTCTTTATTCATGGTAATAGTTGGATCAAGCGCACTGGAGTACCATATAGTCCAGGCATGATGGTAGTGTAA 1629 46.78 MAVAADNVNDNASGGSTAGDVVSTAAVKSLCQPTSYRETCEKVLVNATGDSKDPRDLIKAGFHYAVDQLKLAIANSPTLKESATDPMAKQAVDACEELIDHAVDDLLTSFDKVTDSFTVNRIDNYIETLRLWLSGALTYQETCLDGFKNVPGDTGEKMTNLLKTSREITINGLSMVGEVTAIVTSLWRALGLQSFGRQLRVDEYDEEEPSWVNDRRGLLQATGANVNADLVVAKDGSGKYTTITEALQEVPKFSNKTFIIYVKEGVYEEQVLVDKSMTYVMMIGDGMDKTKITGSKNFKDGVNTFKTATVAVDGVNFIGKDLWFENSAGAEKHQAVALRVQSDMSIFYNCRMDGYQDTLYAHTHRQFYRDCIITGTIDFIFGNAAVVFQNCKILVRKPLENQQCIVTAQGRTERKEPTGIVLQNCVISSDPEYFPVRHISKSYLGRPWKEYSRTIIMQCQIDDLIQPEGWLPWEADFGLKTLFYSEFENRGPGAATQNRVKWRGIKQISAKHALDFTPAFFIHGNSWIKRTGVPYSPGMMVV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2725138 2726842 - CmoCh08G004370.1 Cmo08g00437 387170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00437 542 ProSitePatterns Pectinesterase signature 2. 373 382 IPR033131 -
Cmo08g00437 542 SUPERFAMILY Pectin lyase-like 226 538 IPR011050 -
Cmo08g00437 542 SMART PMEI_2 22 175 IPR006501 GO:0004857
Cmo08g00437 542 Pfam Plant invertase/pectin methylesterase inhibitor 26 162 IPR006501 GO:0004857
Cmo08g00437 542 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 179 IPR035513 -
Cmo08g00437 542 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 177 IPR035513 -
Cmo08g00437 542 TIGRFAM PME_inhib: pectinesterase inhibitor domain 22 171 IPR006501 GO:0004857
Cmo08g00437 542 PANTHER PECTINESTERASE 18 539 - -
Cmo08g00437 542 CDD PMEI-like_3 29 176 - -
Cmo08g00437 542 PANTHER PECTINESTERASE 18 539 - -
Cmo08g00437 542 Pfam Pectinesterase 229 525 IPR000070 GO:0030599|GO:0042545
Cmo08g00437 542 Gene3D - 223 539 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00437 Cmo-Chr8:2725138 Cmo06g01534 Cmo-Chr6:10858549 0 dispersed
Cmo08g00436 Cmo-Chr8:2704680 Cmo08g00437 Cmo-Chr8:2725138 0 tandem
Cmo06g01527 Cmo-Chr6:10836266 Cmo08g00437 Cmo-Chr8:2725138 5.22E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00437 K01051 - csv:101212686 788.489