Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00483 ATGAAGCCAAGTGTCGATGAGGAAACGTTAACGTGGCTTCACAGGCAAGTCTCTGTAACGGCGTTACGTTTTCCGTCTCCTTCCACGAATTTACTCCCTCCCGCGGCGGCTCCCAAGAGAGAGAAAAATCCGATTCCAACTCCAACTTACATTTCTGCAGATTATAGCGATTTTGATCTCTCAGTTGAAGAATCTGATTTTTTGGTAAATGTAAAAAAGGTGGCTGAAACTAAGGTTGTTGTGTGTTCGAAGAGCCTCCCTGTTTTGGAGGTCCCCTATTTCGGTAAAGAGGCTCATCTTGTTGATGAAATGAAGTCCATCGACGGTGCGATTCCCGTTGATCCGACTCTCGATCGTGTTCGCGCTTCCGAATCGGATGTGGAGCAAATTCCAGATACCGACGTCGATTCGATGGAGCAGAGGGAATTTCCAAGTCTCCGGTCGGGGAGCTTTGCTGATATTGGACCTAGGAGAGACATGGAGGATGAACACATAAGGATTGACGATCTGTGTTCACATTTAGGCTCGCTCTTTAAGTTTTCTAAGCCAAGTGGTTTCTATGGGGTGTTTGATGGACATGGAGGACCTGAAGCAGCAGCTTATATAAGAAAGAATATTCTTAGACTCTTTTTTGAAGATGTTAGGTTTCCTCACATGCCTGATGTTGATGAACTCCGGCCGGAGGAGATTGAAAATTTCTTACGAGAAGCATTTCTTCTGGCCGATCAAGCTCTGGCTGATGATTCTGGGATTAGTAATTTGTCTGGGACGACGGCCCTCACTGCTCTTGTGCTTGGAAGGCTTCTAATGGTGGCTAATGTTGGAGATTGCCGGGCTGTTCTTAGTCGGAAGGGAGAGGCAGTAGATATGTCTCAAGACCACAGGCCAAGTTATTCACCGGAGAAGGAACGAGTAGAAGAGTTGGGTGGCTTCGTCGACGGTGGCTATCTTAACGGCCTTTTATCAGTTTCCAGGGCCTTGGGTGATTGGGACATGAAGCTCCTCCCCCATGGTTCTCCTTCACCCCTCATTGCAGAACCAGAATGCAGGCAGGTGGTTCTAACAGAGGAGGATGAGTTCTTAATCATAGCCTGCGATGGGATTTGGGACGTGATGTCAAGCCAGCATGCAGTCGATGTAGTTCGCCGGGGACTTCAGCGACATGACAACCCCGAGCGTTGCGCTCGAGATCTCGTCCTGCAGGCTTTAGGACTAGACTCATTCGATAATCTCACCGTTGTCATTGTTTGCTTCTCTAGTTTCCAAAAGGACAACTCTCCACAACCACAGCAACGAAAATTGAGATACTGCAGCCTCTCTTCTCAAGCCCTTTGTAGCTTGCAGAGATCGTTGGATAAGAGTGGATGCTAA 1371 47.85 MKPSVDEETLTWLHRQVSVTALRFPSPSTNLLPPAAAPKREKNPIPTPTYISADYSDFDLSVEESDFLVNVKKVAETKVVVCSKSLPVLEVPYFGKEAHLVDEMKSIDGAIPVDPTLDRVRASESDVEQIPDTDVDSMEQREFPSLRSGSFADIGPRRDMEDEHIRIDDLCSHLGSLFKFSKPSGFYGVFDGHGGPEAAAYIRKNILRLFFEDVRFPHMPDVDELRPEEIENFLREAFLLADQALADDSGISNLSGTTALTALVLGRLLMVANVGDCRAVLSRKGEAVDMSQDHRPSYSPEKERVEELGGFVDGGYLNGLLSVSRALGDWDMKLLPHGSPSPLIAEPECRQVVLTEEDEFLIIACDGIWDVMSSQHAVDVVRRGLQRHDNPERCARDLVLQALGLDSFDNLTVVIVCFSSFQKDNSPQPQQRKLRYCSLSSQALCSLQRSLDKSGC 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2984744 2987382 + CmoCh08G004830.1 Cmo08g00483 387216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00483 456 SMART PP2C_SIG_2 162 418 IPR001932 -
Cmo08g00483 456 SMART PP2C_4 137 416 IPR001932 -
Cmo08g00483 456 Pfam Protein phosphatase 2C 157 410 IPR001932 -
Cmo08g00483 456 Gene3D - 127 426 IPR036457 -
Cmo08g00483 456 ProSitePatterns PPM-type phosphatase domain signature. 186 194 IPR000222 GO:0043169
Cmo08g00483 456 MobiDBLite consensus disorder prediction 122 141 - -
Cmo08g00483 456 PANTHER PROTEIN PHOSPHATASE 2C 74 437 IPR015655 GO:0004722|GO:0006470
Cmo08g00483 456 CDD PP2Cc 147 418 IPR001932 -
Cmo08g00483 456 ProSiteProfiles PPM-type phosphatase domain profile. 147 418 IPR001932 -
Cmo08g00483 456 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 74 437 - -
Cmo08g00483 456 SUPERFAMILY PP2C-like 140 420 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00483 Cmo17g00985 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00483 Cmo-Chr8:2984744 Cmo08g01262 Cmo-Chr8:7944398 4.22E-112 dispersed
Cmo17g00985 Cmo-Chr17:8536861 Cmo08g00483 Cmo-Chr8:2984744 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00483 K14803 - csv:101216626 614.764