Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00489 ATGGGATGTTTTGGTTGCTGCAAAGAAGATGCTATCCAGATGGCTGCTGATAACAGCAGCATGTACCCGGTAAAAGCTTCAGCAGGAAGTGATGAACGCTACAAGCAGCAAACTGCACCTAAGAGTCCTGTGAAAATGCGACCAATTGAAGTCCCTGCCATATCATTTCAGGAACTAAAGGCAATTACGAAAAATTTTGATGCTCAATGTTTGATTGGAGAGGGTTCATACGGAAGAGTATACTATGGGGTGTTTACAAATGGGCAGACTGTGGCAGTCAAAAACTTGGATGCCAGCAAACAACCTGATGATGAATTCTTATCCCAGGTTTCCATGGCTTCAAGACTAAAGCACGACAATTTTCTAAATTTAATTGGATACTGTGTGGATGGCAATAATCGAATCCTTGCATATGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCAGAACCTGGCCCTGTTCTTTCCTGGACAGAAAGAGTAAAAATTGCTGTAGGTGCTGCAAGGGGGTTGGAGTATTTGCATGAAAAGGCTGATCCCCGTATCACCCATCGAGACATAAAATCCAGCAATGTTTTAATATTTGATGATTATTTGGCGAAGATTGCCGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGCCTTCATTCCACTCGTGTTCTTGGAACCTTTGGTTATCATGCTCCTGAATACGCAATGACTGGACACTTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTCATCCTGCTTGAACTTTTGACAGGAAGAAAGCCTGTTGATCACACATTGCCTCGAGGACAGCAAAGCCTTGTAACATGGGCCACGCCCAAACTTTGCGAGGACAAAGTTAATCAATGTGTTGACGCAAAACTACGAGATGAGTACCCTCCCAAGTCAGTTGCAAAGTTTGCAGCCGTTACTGCATTATGCATTCAATATGAAGCAGATTTCAGGCCAAACATGAGTGTAGTGGTCAAAGCACTGCAGCCTCTGTTAAATCCCCGACCTGGTCCTGGTGGAGAGCGCCAAAACTCTAAACAGTAA 1086 44.11 MGCFGCCKEDAIQMAADNSSMYPVKASAGSDERYKQQTAPKSPVKMRPIEVPAISFQELKAITKNFDAQCLIGEGSYGRVYYGVFTNGQTVAVKNLDASKQPDDEFLSQVSMASRLKHDNFLNLIGYCVDGNNRILAYEYASNGSLHDILHGRKGVKGAEPGPVLSWTERVKIAVGAARGLEYLHEKADPRITHRDIKSSNVLIFDDYLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGHLNAKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVNQCVDAKLRDEYPPKSVAKFAAVTALCIQYEADFRPNMSVVVKALQPLLNPRPGPGGERQNSKQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3011861 3016686 + CmoCh08G004890.1 Cmo08g00489 387222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00489 361 SMART serkin_6 66 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00489 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 354 - -
Cmo08g00489 361 ProSiteProfiles Protein kinase domain profile. 66 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo08g00489 361 SUPERFAMILY Protein kinase-like (PK-like) 41 342 IPR011009 -
Cmo08g00489 361 CDD STKc_IRAK 72 345 - -
Cmo08g00489 361 Gene3D Transferase(Phosphotransferase) domain 1 141 350 - -
Cmo08g00489 361 Pfam Protein tyrosine and serine/threonine kinase 71 342 IPR001245 GO:0004672|GO:0006468
Cmo08g00489 361 Gene3D Phosphorylase Kinase; domain 1 25 140 - -
Cmo08g00489 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Cmo08g00489 361 PIRSF ILK 8 348 - -
Cmo08g00489 361 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Cmo08g00489 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 354 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00271 Cmo08g00489 CCT
Cmo08g00489 Cmo14g00983 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00489 Cmo-Chr8:3011861 Cmo14g01526 Cmo-Chr14:12203277 1.88E-168 dispersed
Cmo01g00271 Cmo-Chr1:1260939 Cmo08g00489 Cmo-Chr8:3011861 0 wgd
Cmo14g00983 Cmo-Chr14:5263303 Cmo08g00489 Cmo-Chr8:3011861 5.48E-14 wgd
Cmo17g00968 Cmo-Chr17:8483250 Cmo08g00489 Cmo-Chr8:3011861 3.02E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74521 PF07714 PK_Tyr_Ser-Thr 2.10E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00489 K13436 - csv:101215263 634.409