Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo08g00518 ATGGGAAAGGCAGCAGCTGCCATGGAAACAGGAGAATCTGTGGCAAAGGTTATGAAGAACATGGGTCCCCACACCTGTCAAATATGTGGAGATAACGTTGGGAAGACCATTGAGGGTGAAGTGTTTGTTGCTTGTGATGTTTGCACATTTCCTGTTTGCAGACCATGTTATGAGTACGAGAGAAAAGATGGGAATCAGTCTTGTCCTCAATGTAAAAGCAGATACAAGAGACACAAAGGAAGTCCTGCTGTTCTAGGCGACGAAGATGACGTTGAGCTTGACGACGACGACGACAACGCCATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAGAAGATTGAGGAGCACATGAAGAACTGGCGGATGTCATATGGACAAGCACAAGATCTCCCGCCTCCAAATTATGACAAAGAAGTTTCTTTAAATCACATTCCCTTGCTCACCAATGGGCAGGTTTCTGGAGAACTTTCAGCTGCATCGCCCGAGCATCATTCAATGGCATCTCCCGGACATCCTCGTGGGAAGCCGATATATTCTCTTTCGTACGCAGCTGATATCAACCAATCACCTAATGTGCGAGACGTGGACGCTACAAAGGAGTATAATTCATCAGGGCTAGGCAACGTAGCTTGGAAAGAGAGAGTCGATGGCTGGAAGATGAAACAAGAGAAGAATGCTGTTCCAATGAGCACAGCCCATGCTGCATCTGAAAGGGGAGGTGGAGATATCGATGCCTGCACGGACGTGCTTGTCGATGATTCCTTATTAAACGATGAAGCTCGTCAGCCTCTCTCGCGAAAGGTTTCTATTCCATCATCAAGGATAAACCCTTACCGATTGGTGATTGTTCTTCGGCTCGTGATTATTTGCTTTTTCTTGCACTACCGAATAACGAATCCTGTACGTAATGCATACACTCTATGGCTGGTATCTGTTATATGTGAGATCTGGTTTGCAATATCCTGGATATTAGATCAGTTTCCGAAGTGGTTTCCTGTAAACCGTGAGACATATCTCGATCGGCTTGCATTAAGATATGATAGGGAAGGAGAACCGTCACAGCTTGCTGCCGTTGACATTTTCGTGAGTACAGTTGACCCACTGAAGGAGCCTCCACTTGTCACAGCCAACACTGTGCTATCCATTCTCGCTGTTGACTACCCCGTTGACAAGGTCTCGTGCTACGTCTCTGATGACGGAGCTGCCATGTTGACATTTGAAGCATTATCTGAGACATCAGAGTTTGCAAGGTCATGGGTGCCTTTCTGCAAGAAGTACAGCATTGAGCCTCGGGCTCCCGAATGGTACTTCGCTCAGAAAATTGATTACTTGAAGGATAAAGTTCATCCGTCGTTTGTCAAAGATCGAAGAGCGATGAAGTGCCTAAAACCCGAAAAACAACCACCCGAAATTGTAAATATCTACAAAGTTTTGATAGAGGAAGCTATTTTATTGGCCCTCACTTTATTGCAGAGAGAATACGAGGAGTTTAAGGTTCGGATCAACTGCCTGGTATCGAAGGCGCAGAAGGTTCCCGAAGAAGGATGGATTATGCAAGATGGAACGCCATGGCCCGGAAATAATACTAGAGACCATCCAGGAATGATCCAGAACGGTGGACTGGATTCTGAAGGTAACGAGTTGCCTCGATTAGTCTATGTATCTCGTGAAAAACGTCCAGGATTCCAACATCATAAGAAAGCCGGTGCAATGAACGCTCTTGTTCGGGTGTCAGCTGTTCTTACGAATGGCCCATTCTTGTTGAATCTCGACTGTGATCACTACATAAACAATAGCAAGGCGTTGAGGGAAGCAATGTGTTTCATGATGGATCCAAACCTAGGAAAATATGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATCGATAAGAACGATCGATACGCCAACCGTAATACTGTTTTCTTTGATATAAATTTAAGAGGTTTAGATGGTATTCAAGGTCCAGTTTATGTGGGTACTGGATGTGTTTTCAATAGAACTGCACTGTATGGTTACGAACCTCCTCTCAAACCGAAGCATCGGAAACCGGGGGTTCTGTCGTTACTCTGTGGTGGATCGAGAAAGAAAAATTCAAAATCAAGTAAAAAGAGTCCAGACAAGAAGAAGTCGAACAAGCACGTGGACCCGACAGTGCCAATTTTCAATCTCGATGACGTTGAAGATGCACTGCTAATGTCGCATATGACTCTCGAGCAAAGGTTTGGCCAGTCTGCTGTTTTTGTTGCCTCGACCCTCATGGAAAACGGCGGCATTCCTCAATCTGCAACACCTGAATCTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGCGGATATGAAGACAAAACCGACTGGGGATCTGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATCCTTACAGGGTTCAAAATGCATGCTCGTGGTTGGCGGTCGATTTACTGCATACCAAAACGTCCTGCCTTTAAAGGGTCGGCGCCTATCAATCTTTCAGATCGACTAAACCAAGTTCTTCGATGGGCGCTCGGTTCCGTGGAGATTCTTCTGAGTAGGCATTGCCCTATGTGGTATGGCTATGGTGGAAGGCTCAAATGGCTCGAAAGGTTTGCGTATGTGAACACGACAATCTATCCGATCACCGCTGTTCCTCTTCTCATGTACTGTACGTTACCAGCCGTGTGTCTGCTGACAAACAAATTCATTATTCCCCAGGTGCGACATAACGAAAAAAACCCGAATTTTAGGTCGACAATTAGTAACATTGCAAGTATATGGTTTATATCCCTCTTCCTCTCCATCTTCGCGACGGGAATTCTCGAGATGAGATGGAGCGGAGTCGGGATCGACGAGTGGTGGAGAAACGAACAATTCTGGGTGATCGGTGGCGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTTTGCTCAAGGTTCTAGCTGGAATCGACACGAACTTCACCGTCACGTCCAAGGCATCGGATGAAGATGGCGACTTCGCCGAGCTTTACTTGTTCAAATGGACAACTCTTCTCATTCCACCAACTACGCTCCTTATAGTAAACCTGGTTGGCGTTGTTGCAGGCATATCTTATGCAATCAACAGCGGATACCAATCATGGGGACCGTTGTTTGGCAAGCTATTCTTTGCCTTTTGGGTGATCATCCATCTCTATCCCTTCTTGAAAGGTTTAATGGGTCGTCAAAACAGAACGCCGACCATCGTCGTCGTGTGGTCGATTCTACTTGCTTCCATCTTCTCGTTGTTATGGGTAAGAATCGATCCGTTCACTACAACAGTCATAGGTCCCGACGTCGAGGAGTGTGGAATCAACTGCTAG 3354 45.62 MGKAAAAMETGESVAKVMKNMGPHTCQICGDNVGKTIEGEVFVACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEDDVELDDDDDNAIDLNYISESQKQKQKIEEHMKNWRMSYGQAQDLPPPNYDKEVSLNHIPLLTNGQVSGELSAASPEHHSMASPGHPRGKPIYSLSYAADINQSPNVRDVDATKEYNSSGLGNVAWKERVDGWKMKQEKNAVPMSTAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRLVIVLRLVIICFFLHYRITNPVRNAYTLWLVSVICEIWFAISWILDQFPKWFPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKCLKPEKQPPEIVNIYKVLIEEAILLALTLLQREYEEFKVRINCLVSKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQNGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGVLSLLCGGSRKKNSKSSKKSPDKKKSNKHVDPTVPIFNLDDVEDALLMSHMTLEQRFGQSAVFVASTLMENGGIPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPMWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQVRHNEKNPNFRSTISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVIGPDVEECGINC 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3241989 3248943 + CmoCh08G005180.1 Cmo08g00518 387251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo08g00518 1117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 100 IPR013083 -
Cmo08g00518 1117 SUPERFAMILY Nucleotide-diphospho-sugar transferases 546 898 IPR029044 -
Cmo08g00518 1117 SUPERFAMILY RING/U-box 12 96 - -
Cmo08g00518 1117 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 519 678 IPR029044 -
Cmo08g00518 1117 PANTHER CELLULOSE SYNTHASE 485 1117 - -
Cmo08g00518 1117 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 485 1117 - -
Cmo08g00518 1117 Pfam Cellulose synthase 492 1108 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo08g00518 1117 Pfam Cellulose synthase 361 463 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo08g00518 1117 CDD mRING-HC-C4C4_CesA_plant 24 74 - -
Cmo08g00518 1117 Pfam Zinc-binding RING-finger 16 90 IPR027934 -
Cmo08g00518 1117 MobiDBLite consensus disorder prediction 694 720 - -
Cmo08g00518 1117 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 13 463 - -
Cmo08g00518 1117 PANTHER CELLULOSE SYNTHASE 13 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00070 Cmo-Chr3:1074167 Cmo08g00518 Cmo-Chr8:3241989 0 dispersed
Cmo08g00518 Cmo-Chr8:3241989 Cmo09g00475 Cmo-Chr9:2136134 0 dispersed
Cmo08g00518 Cmo-Chr8:3241989 Cmo07g01364 Cmo-Chr7:7723464 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo08g00518 K10999 - csv:101206590 2004.18